Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4400 163 7e-35 seq7134 145 2e-29 seq11706 102 2e-16 seq66 98.7 2e-15 >seq4400 Length=129001 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || ||||| || || || |||||||| |||| Sbjct 39889 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGG 39945 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | |||||||||||||| || ||||| ||||| |||||||| || Sbjct 39946 TGGA--GCCCAGCGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 40003 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||||| |||||||| | || ||||| || || || ||||| || ||||| | ||||| Sbjct 40004 CCCTCCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCT 40063 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||| |||| ||||| || || ||||| || || Sbjct 40064 CTCCGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGT 40105 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 40128 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 40185 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||| Sbjct 40186 ATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGC 40245 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | ||||| ||||||| ||| Sbjct 40246 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACA 40305 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 40306 TCCAGAAAGAGTCGACCCTGCACCTCGT 40333 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 40356 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 40413 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||| Sbjct 40414 ATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAGC 40473 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | ||||| ||||||| ||| Sbjct 40474 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACA 40533 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 40534 TCCAGAAAGAGTCGACCCTGCACCTGGT 40561 >seq7134 Length=91468 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| | || || || || |||||||| |||||||| || ||| Sbjct 86306 CAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86363 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 86364 ACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 86423 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| ||||| || | ||||| | || || ||| Sbjct 86424 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86483 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 86484 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86524 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 86990 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 87047 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 87048 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 87107 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| ||||| || | ||||| | || || ||| Sbjct 87108 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 87167 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 87168 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 87208 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 87218 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 87275 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || || || || ||||| || ||||||| Sbjct 87276 ACACCATCGAGAATGTCAAGGCCAAGATCCATGATAAGGAGGGCATCCCCCCAGACCAGC 87335 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| ||||||||| | ||||| | || || ||| Sbjct 87336 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACA 87395 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || |||| |||| Sbjct 87396 TCCAGAAAGAGTCCACCTTGCA-CTTG 87421 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 86534 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86591 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 86592 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 86651 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| ||||| || | ||||| | || || ||| Sbjct 86652 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86711 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 86712 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86752 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 86762 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86819 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 86820 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 86879 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| ||||| || | ||||| | || || ||| Sbjct 86880 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86939 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 86940 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86980 >seq11706 Length=58367 Score = 102 bits (112), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| ||||||| || || || || || ||||| |||||||| ||| || ||| Sbjct 34549 CAGATTTTCATGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTTGGAC 34608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG--- 178040 || | || || || ||| ||||||||||| || |||||||| ||||| | ||| Sbjct 34609 ACAACAGA-AATGTAAAAACCAAGATTCAGGATAAGGAAGGAATTCCTCCTAAACAGTGA 34667 Query 178041 -CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 | |||| ||||| || || || |||| ||||||||| ||| | | || || || Sbjct 34668 AGACTGACTGATCTTTGCTGGCAATTAGCTGGAAGATGGACATACTTTGTCTGACTACAA 34727 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | | ||||| || || | | |||||| | || ||||| Sbjct 34728 CATTCAAAAGGAGTCTGCTTTTCATCTTATATTCAGACT 34766 >seq66 Length=542294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 261818 CAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 261761 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || ||||| ||||| || || || || || ||||| || ||||||| Sbjct 261760 ACACCATCGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAGC 261701 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||| | ||||||||| ||||| || || ||| Sbjct 261700 AGAGGTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGACACACTCTGTTTGACTACAACA 261641 Query 178102 TCCA--AAAAG 178110 |||| ||||| Sbjct 261640 TCCAGGAAAAG 261630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202300395441768