Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq4400 163 7e-35
seq7134 145 2e-29
seq11706 102 2e-16
seq66 98.7 2e-15
>seq4400
Length=129001
Score = 163 bits (180), Expect = 7e-35
Identities = 171/222 (77%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || |||||||| || ||||| || || || |||||||| ||||
Sbjct 39889 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGG 39945
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| | |||||||||||||| || ||||| ||||| |||||||| ||
Sbjct 39946 TGGA--GCCCAGCGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 40003
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|||||| |||||||| | || ||||| || || || ||||| || ||||| | |||||
Sbjct 40004 CCCTCCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCT 40063
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||| ||| |||| ||||| || || ||||| || ||
Sbjct 40064 CTCCGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGT 40105
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || ||||| || || || |||||||| |||||||| || |||
Sbjct 40128 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 40185
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||
Sbjct 40186 ATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGC 40245
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| || ||||| | ||||| ||||||| |||
Sbjct 40246 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACA 40305
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 40306 TCCAGAAAGAGTCGACCCTGCACCTCGT 40333
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || ||||| || || || |||||||| |||||||| || |||
Sbjct 40356 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 40413
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||
Sbjct 40414 ATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAGC 40473
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| || ||||| | ||||| ||||||| |||
Sbjct 40474 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACA 40533
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 40534 TCCAGAAAGAGTCGACCCTGCACCTGGT 40561
>seq7134
Length=91468
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| ||||| | || || || || |||||||| |||||||| || |||
Sbjct 86306 CAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86363
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || || ||||| || ||||| || |||||||
Sbjct 86364 ACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 86423
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| ||||| || | ||||| | || || |||
Sbjct 86424 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86483
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | ||||||
Sbjct 86484 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86524
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 86990 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 87047
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 87048 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 87107
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| ||||| || | ||||| | || || |||
Sbjct 87108 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 87167
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | ||||||
Sbjct 87168 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 87208
Score = 134 bits (148), Expect = 3e-26
Identities = 156/207 (75%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 87218 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 87275
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || || || || || ||||| || |||||||
Sbjct 87276 ACACCATCGAGAATGTCAAGGCCAAGATCCATGATAAGGAGGGCATCCCCCCAGACCAGC 87335
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| ||||| || ||||| ||||||||| | ||||| | || || |||
Sbjct 87336 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACA 87395
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || || |||| ||||
Sbjct 87396 TCCAGAAAGAGTCCACCTTGCA-CTTG 87421
Score = 132 bits (146), Expect = 1e-25
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 86534 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86591
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 86592 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 86651
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| || ||||| ||||| || | ||||| | || || |||
Sbjct 86652 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86711
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 86712 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86752
Score = 132 bits (146), Expect = 1e-25
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 86762 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86819
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 86820 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 86879
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| || ||||| ||||| || | ||||| | || || |||
Sbjct 86880 AGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACA 86939
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 86940 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 86980
>seq11706
Length=58367
Score = 102 bits (112), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| ||||||| || || || || || ||||| |||||||| ||| || |||
Sbjct 34549 CAGATTTTCATGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTTGGAC 34608
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG--- 178040
|| | || || || ||| ||||||||||| || |||||||| ||||| | |||
Sbjct 34609 ACAACAGA-AATGTAAAAACCAAGATTCAGGATAAGGAAGGAATTCCTCCTAAACAGTGA 34667
Query 178041 -CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099
| |||| ||||| || || || |||| ||||||||| ||| | | || || ||
Sbjct 34668 AGACTGACTGATCTTTGCTGGCAATTAGCTGGAAGATGGACATACTTTGTCTGACTACAA 34727
Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
| | ||||| || || | | |||||| | || |||||
Sbjct 34728 CATTCAAAAGGAGTCTGCTTTTCATCTTATATTCAGACT 34766
>seq66
Length=542294
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||| |||||||| || |||
Sbjct 261818 CAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 261761
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||| || ||||| ||||| || || || || || ||||| || |||||||
Sbjct 261760 ACACCATCGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAGC 261701
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || || ||| | ||||||||| ||||| || || |||
Sbjct 261700 AGAGGTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGACACACTCTGTTTGACTACAACA 261641
Query 178102 TCCA--AAAAG 178110
|||| |||||
Sbjct 261640 TCCAGGAAAAG 261630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202300395441768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |