Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq52001 93.3 3e-14 seq66368 86.0 5e-12 seq55711 86.0 5e-12 seq22649 84.2 2e-11 >seq52001 Length=6774 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | |||| |||||| ||| ||||||||| |||||||||||| | Sbjct 6658 CCTCCTCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6717 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || ||| |||| ||||| || || |||||||| ||||||| ||| ||||| || Sbjct 6718 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCAGG 6773 >seq66368 Length=2842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| |||||| ||| ||| ||||| |||||||||||| Sbjct 491 CCTCCCCTCAAGCACAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 550 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | ||| ||||| || || | || ||| ||||||| ||| || || || || Sbjct 551 AGGATACTTCTGTCTTCCAGCTGCTTGCTGGTGAAGATCAACCTCTGCTGATCAGGCGGG 610 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||| ||||| || || ||| || | | | | |||| | ||||||| Sbjct 611 ATGCCCTTTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 670 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| ||| ||| ||||||| ||||| ||||| Sbjct 671 TCCAGGGTTATGGTCTTACCCTTCAAGGTCTTCATGAAGATCTGCAT 717 >seq55711 Length=2414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT---TGGCGATCGTC 45183 |||||| ||||| ||| ||| ||||| ||||| || || || |||| ||| || Sbjct 2083 TACCAAATGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAGAGAGTATGGCCATCCTC 2142 Query 45184 GTCCAGTTGTTTTCCGGCGAATA-TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 ||| ||||| || || || | ||| ||||| ||||| || || | |||||||||| Sbjct 2143 ---CAGCTGTTTGCCCGCAAAAAATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGT 2199 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 | ||||| || || | | | |||| | ||| ||||| | || || | Sbjct 2200 CTTGGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGTGTGATAG 2259 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||||| |||||||||||||| ||||| Sbjct 2260 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2293 >seq22649 Length=5672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| |||| ||| ||||| ||||| ||||| || || | || ||| Sbjct 768 ACCAAGTGCACGGTGCACTCTTTCTGGATGTTATAGTCTGAGAGAGTACGGCCATCCTCC 709 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || | | |||| |||| ||||| || || | ||||||||| | Sbjct 708 AGCTGTTTGCCCACAGAAATCAGATGCTGCTGGTCAGGTGGGAGGCCCTCCTTGGCTTGG 649 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | ||| ||||| | || || |||||| Sbjct 648 ATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGTGTGATGGTCTTG 589 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||||||||| ||||| Sbjct 588 CCCGTCAGGGTCTTCACAAAGATCTGCAT 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394146525370312