Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq166013 147 3e-30 seq32041 123 3e-23 seq36395 116 5e-21 seq63341 109 7e-19 seq60851 107 3e-18 >seq166013 Length=23081 Score = 147 bits (162), Expect = 3e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 8786 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATATTGCTGGTATACGGTTCAATA 8727 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || ||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 8726 GATTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGAGCAATAAGTAAA 8667 Query 71263 CTATTTCTAAGACCAT 71278 |||||||| | ||||| Sbjct 8666 CTATTTCTTATACCAT 8651 >seq32041 Length=12153 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 9133 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9192 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 9193 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 9252 Query 42207 C 42207 | Sbjct 9253 C 9253 >seq36395 Length=32485 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||| |||||||| |||||||| ||||| || || | || || Sbjct 15297 TCATCTCTGCTAATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 15356 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | ||| ||||||| ||||| |||||||| ||||| ||||||||||| || |||||||| Sbjct 15357 AACCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 15415 >seq63341 Length=12409 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | || || ||| || ||||| || || || || ||||| ||| Sbjct 8810 TAGGTTTCATATGGGCCATGTTCTTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCGTAA 8751 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || |||| |||||| | || || || || || ||||| ||||| Sbjct 8750 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGAGCCTCTGGACTCTCAAAAGGATAT 8691 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| || |||||||| ||||| || ||||| || || || | || | Sbjct 8690 CTCATCAGAATAAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 8631 Query 71563 TTATTAGA 71570 ||||| || Sbjct 8630 TTATTTGA 8623 >seq60851 Length=21511 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || ||||| |||| | ||| Sbjct 2455 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGC 2514 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 2515 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 2574 Query 72142 TCCAAGTATATGGC 72155 |||||||| || || Sbjct 2575 TCCAAGTAAATAGC 2588 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| |||||||| || || | || || || || || || || || |||| Sbjct 14103 CACTAAACACTTTCTTTGTTTCTTTATGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 14162 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 14163 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 14222 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 14223 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 14268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669521150502720