Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq88220 156 6e-33 seq103330 118 1e-21 >seq88220 Length=24501 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || |||| ||||||||| || || | | || |||||||||||| Sbjct 21172 GTCTGGAACAAGCGCTCATCACCCCATTCTGGGTGCTCCTCTCTAAGCACATCGCACACT 21231 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||| | |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 21232 CTGTTGTGTTCTCGAAGCCAGATCGTGGCATACATCATCAGACCGGGCACCAGGCCGAAC 21291 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || | | || || |||||||| | | Sbjct 21292 ACCTCCTGCCCCACAGCGAAGCGCAGGTGTTCAGGGATGTGAGGGGGGTAGATCATCTCC 21351 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||||| | ||| || |||| ||| || ||||| |||| Sbjct 21352 ACCTGAGTGTCTTTGACTGTGGGCGGGTACACTTCCCCATCAATTATCT 21400 Score = 147 bits (162), Expect = 3e-30 Identities = 203/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| ||||| ||||| | |||| || ||||| || | ||| | |||| ||| | Sbjct 19633 GGACAGCCTTTCACGTTATTGCAGATAAGGGACTGAATTGAGGCAGTGTTGATGATTTTA 19692 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || ||||| || || ||||| ||||||||||| || || || || || Sbjct 19693 AAGCCTACTTCTCCACCAAAAGTGCTAGGTTTCCAGTAGTGAGGAGAACATATAGGATTG 19752 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | ||| ||||| || || || || | ||| ||||||| |||||| Sbjct 19753 CCCATCAGTCCTTTCAAGGAGAACGGCGCTCCGAGTTCTACCATGGTCTCACCAAAGATG 19812 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || | ||||| ||||||||||||| | | | |||| ||||| || || ||||| Sbjct 19813 GCATCTGGACGAGGCTTTTCCACCAGAAGGGCAGGATACAGCTCCATGGCATCAATGTCA 19872 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||||| | || ||||| |||||||| |||||||| Sbjct 19873 CCATAGAGGGCTTCTAACTCAGCAGCCATTTCCTTCTCTCCTGT 19916 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| |||||| | || |||||| ||| ||| | || Sbjct 22184 TCTTACCCCATGATTCAGTCCTTTGGTGAAGCCTGGTCCTCGCTTATGATCTGTCTTGAA 22243 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||||| ||||| || ||| |||| || || ||||| || || |||||||||||||| Sbjct 22244 AAACTGGTGGGTGAAGTGCTGGGCAAAGAACGCGAACATCAAATTTGTGCCCTGGGGATC 22303 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || | || | | | |||||| ||||||||||| | | ||| || || | Sbjct 22304 AGGGATAAACTTTCCTCTTAGAAGAAATTTTTCCACAATCACTTTTGAATCAGGAAGCTC 22363 Query 10208 ttttttACCTGGTGAACGAGAACA 10231 ||| || |||| || ||||||| Sbjct 22364 TTTCTTCCCTGCAAAATGAGAACA 22387 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| | || | |||||||| || || | || || ||||| ||| || | Sbjct 22784 TCACCTTTTATACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGAGCTCTGGTA 22843 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || | |||| | ||||| | Sbjct 22844 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTACATTGTAAGTT 22903 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| |||||| ||||| Sbjct 22904 GGCGGGCTGTCAATCAAATGTGATCTAGCTGAA 22936 >seq103330 Length=22740 Score = 118 bits (130), Expect = 1e-21 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| || |||| || || || || ||||| | |||||||| | || || Sbjct 11594 TTGACGATGTTGAAGCCCATCTCACCACCAAATGTGCTCGACTTCCAGTACTCTGGAGAA 11535 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| | | |||||| ||||||||||| |||||||| | || | |||||| Sbjct 11534 CAGATGGGATTCCCTAAGAGGCCCTTGAGGGAAAAGGGAGCCCCGATTTCTATCATGCTC 11475 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTC-CACCAAGAA-TCCGGTGTACAACTCCA 8918 || || ||||||| ||| ||| || | |||| || ||| | ||| | ||| ||||||| Sbjct 11474 TCCCCAAAGATGGAGTTTGGATGG--CATTTCTCAAGAAGCAGTCCCGGGTAAAACTCCA 11417 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || |||||||||||||| || || | || || || || |||| |||||| Sbjct 11416 AGGCATCGATGTCTCCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTCCTCTCCT 11361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706816617559680