Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq127102 132 8e-27 seq167281 127 3e-25 seq52898 122 1e-23 >seq127102 Length=7125 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || |||| |||||||| || ||||||||||| || || Sbjct 4826 CGCCAAGCGCCACCGCAAGGTGCTGAGAGACAACATCCAGGGCATCACCAAGCCCGCGAT 4885 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| ||||||||||| |||| || | |||| || |||| Sbjct 4886 CCGGCGCCTGGCTCGGCGTGGAGGAGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGAC 4945 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 4946 GCGGGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 5005 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 5006 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 5065 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 5066 ACGCACCCTGTATGGCTTCGG 5086 >seq167281 Length=7010 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 2191 CGCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2133 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || ||||| |||||||| |||| || | |||| || |||| Sbjct 2132 TCCGCCGCCTGGCCCGGCGCGGTGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 2073 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || || || ||| || | Sbjct 2072 CCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 2013 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 2012 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 1953 Query 16671 GCCG 16674 |||| Sbjct 1952 GCCG 1949 >seq52898 Length=2612 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 900 CGCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 958 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || ||||| |||||||| |||| || | |||| || |||| Sbjct 959 TCCGCCGCCTGGCCCGGCGCGGTGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1018 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||| ||||||| ||| ||| |||| || || || ||| || | Sbjct 1019 CCCGCGGGGTGCCCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 1078 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 1079 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 1138 Query 16671 GCCG 16674 |||| Sbjct 1139 GCCG 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78898855780296