Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq57447 114 9e-21 seq71549 93.3 3e-14 seq40632 86.0 4e-12 seq38969 86.0 4e-12 >seq57447 Length=18163 Score = 114 bits (126), Expect = 9e-21 Identities = 218/319 (68%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--G 6231 ||||| || || | || | ||| ||||| | |||||| ||||| | ||||| | Sbjct 7544 AACGTCAACCGCAGCATGCCAGACCAGTTCTGTCACTACAAGATGCCCC--ATCTGATTG 7601 Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||||| || || || ||||| || || || || || || ||||||||| ||| || | Sbjct 7602 CCAAGGTTGAAGGCAAAGGAAATGGAATCAAGACAGTTATAGTCAACATGGTTGACGTTG 7661 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||| ||| || ||| | || || || || ||||||||||| || ||||| || | Sbjct 7662 CAAAGGTGCTTAATCGGCCTCCAACGTATCCCACCAAATATTTCGGTTGTGAACTGGGAG 7721 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | ||||| | ||||||| || || || || | || || | ||||| ||| | Sbjct 7722 CACAGACCCGGTTTGATGTTAAGAATGAACGTTACACTGTCAGTGGATCTCATGAGGTGA 7781 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 |||||||| ||| | | || | || ||| || ||||| || |||| || || | Sbjct 7782 ATAAGCTGCAAGACATGTTGGATAGATTCATTAAAAAATTTGTTCTCTGTCCTGAGTGTG 7841 Query 6472 ATAACCCGGAGACCGAGCT 6490 | || || || ||||| || Sbjct 7842 AGAATCCTGAAACCGATCT 7860 >seq71549 Length=6799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 || ||||||| |||||||||||| | |||| ||| ||||| || ||||||||| || Sbjct 67 CCCTTCCCTTAGCTGTGGTTTCGGTGGATATTAGGTAGGGACTGTGGGAATCTCGTTCAT 126 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||| |||||||||||||||| || Sbjct 127 CCATTCATGCGTGTCACTAATTAGATGATGA 157 >seq40632 Length=8250 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||| | |||||||||||| ||||| ||||||||| || | || Sbjct 8026 CAACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCTATC 7967 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||| || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 7966 TTCCAGTTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTTTC 7907 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | | | |||| | |||| | || | || ||||| Sbjct 7906 TTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAAAGTTCAGCCTCAAGAGTGATAGT 7847 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | | | |||||| | ||| |||||||| ||| Sbjct 7846 CTTCCTTGCAAGGGTTTTAATGAAAATCTGCATTTTT 7810 >seq38969 Length=11823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||| | | | || |||||| | Sbjct 6335 AAGCCCCTTCCCTTGGCTGTGGTTTCTCTGGATAGTAGGTGGAGACAGTGGGAATCTCCT 6276 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| | |||||||||||||||| || Sbjct 6275 TCATCCATTCATTTGTGTCACTAATTAGATGATGA 6241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334159863900632