Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq55711 114 3e-20 seq141718 95.1 3e-14 seq164519 93.3 1e-13 seq178408 91.5 3e-13 >seq55711 Length=2414 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | ||| | ||| ||||| ||||| ||||| || | | Sbjct 2066 CCACCCCGTAGACGAAGTACCAAATGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAG 2125 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA-TCAGACGCTGTTGAGAATCTGG 288365 || || | || || || | ||||| || || || | |||||||||| || | ||| Sbjct 2126 AGAGTATGGCCATCCTCCAGCTGTTTGCCCGCAAAAAATCAGACGCTGCTGGTCAGGTGG 2185 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || || |||||||| ||||| || || || |||| || || | || || Sbjct 2186 AATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCAAC 2245 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 2246 CTCAAGTGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2293 >seq141718 Length=16494 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||| |||||||||||||| | ||| ||||| || || || | ||||| ||||| || Sbjct 9473 TCTTCCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAA 9414 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| |||| || | ||| || || || || || |||||||| ||||| || | Sbjct 9413 CTCAGATGCTGCTGCTCAGGTGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATCC 9354 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||| ||| | | ||| || || || ||| | ||||| | | ||| ||||| || Sbjct 9353 TCAATACTATCACCGGGTTCAACCTCAAGTGTGGTGGTCTTAGCTGGCAGGGTCTTCACA 9294 Query 288463 AATATCT 288469 || |||| Sbjct 9293 AAGATCT 9287 >seq164519 Length=6375 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || ||||| | || || |||| ||||||| ||| || || || ||| Sbjct 1300 TCTTTTTGAATTTTGTAGTCAGACAGGGTATGTCCATCTTCTAGTTGCTTGCCAGCAAAG 1359 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||| ||| ||||||||||| || || || || ||| Sbjct 1360 ATCAGTCTTTGCTGATCAGGAGGAATTC-TTCCTTATCCTGGATCTTGGCCTTTACATTT 1418 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 ||||| | ||| | ||| || || || ||||| ||||||| Sbjct 1419 TCTATTGTATCTAAGGGTTCAACCTCAAGAGTGATGGTCTTCC 1461 >seq178408 Length=1377 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| ||| |||| | ||| ||||| || || || | ||||| || || || | Sbjct 1125 CTTTCTGGATGTTACAGTCCGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCCAAAA 1066 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||||||||| || | |||| || || || || || ||||| ||||| || || | Sbjct 1065 TCAGACGCTGCTGGTCAGGAGGGACGCCCTCCTTGTCTTGCATTTTAGCTTTGACATTCT 1006 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | ||| || || | || || ||||| ||| | ||||| | |||| ||||| || | Sbjct 1005 CAGTAGTGTCACTGGGCTCGACCTCGAGTGTGGTGGTCTTTTCTATCAGGGTCTTTACAA 946 Query 288464 ATATCTGCAT 288473 | ||||||| Sbjct 945 AGGTCTGCAT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176739270487216