Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq55711 105 7e-18 seq129265 89.7 6e-13 seq5094 89.7 6e-13 seq3712 89.7 6e-13 seq43270 82.4 8e-11 >seq55711 Length=2414 Score = 105 bits (116), Expect = 7e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | |||||||||| ||| ||| || || || || ||||| | Sbjct 2066 CCACCCCGTAGACGAAGTACCAAATGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAG 2125 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA-TGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || ||||| || || || || | | || ||||||||||| | ||| Sbjct 2126 AGAGTATGGCCATCCTCCAGCTGTTTGCCCGCAAAAAATCAGACGCTGCTGGTCAGGTGG 2185 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 2186 AATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCAAC 2245 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || |||||||| || ||||| |||||||| ||||| Sbjct 2246 CTCAAGTGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2293 >seq129265 Length=9115 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 364 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 305 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 304 TACTAACGAGGA 293 >seq5094 Length=12911 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 4918 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 4859 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 4858 TATACTAACGAGGA 4845 >seq3712 Length=4825 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1890 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1831 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1830 TACTAACGAGGA 1819 >seq43270 Length=7483 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| | ||||||||||| Sbjct 7107 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA-ACTCACCACTA 7165 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7166 TACTAACGAGGA 7177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541903168260480