Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq110923 138 9e-28 seq179715 118 9e-22 seq166506 109 4e-19 seq76481 84.2 2e-11 seq163223 82.4 6e-11 >seq110923 Length=21527 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 6259 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 6200 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| | |||||||| || |||||||| || ||||| |||| | Sbjct 6199 ACACCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGACAGGATAGCTCACCGTTTACC 6140 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||||||||| || ||||| || Sbjct 6139 ACATAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATAAG 6096 >seq179715 Length=1504 Score = 118 bits (130), Expect = 9e-22 Identities = 159/219 (73%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 || |||||| ||| |||| ||||| || |||||||||| || || | || || || Sbjct 229 GATGTGAGCGATCGTGTAGGTGAGCAGGGAGTAGCTGGTGAG--TA----GCACACCCAG 176 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 |||||||| | |||||||| || ||||| || || ||||| | || |||||| || Sbjct 175 GCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGATAGCTCACTGTTCACCACGTAGAA 116 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 ||| || | || ||||||||||| || |||||||| | ||||| || || || || Sbjct 115 CTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGAAAGATCTTTTGGATTTCAAGC 56 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||||| ||| || |||||| || |||||| ||||| Sbjct 55 GCACAGGATAAT--TCCTGTCGTCAGGGTTGGATCTGAT 19 >seq166506 Length=3163 Score = 109 bits (120), Expect = 4e-19 Identities = 118/153 (77%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 112138 ||||||||| || || || || || || || ||||| |||| || |||||||| | Sbjct 1089 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTT 1148 Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198 ||| ||||| |||||| ||||| ||||||||||| |||||||||||||| ||||||| | Sbjct 1149 TCA-AGGTCGATTCTTCTCGGGAATGGAGAACCAGGTCTTTCTACCCATAATCACCAAAT 1207 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 |||| || ||| ||||||| || | |||| Sbjct 1208 TCTGTTTACCT---TCTGAAGAGGTTGTAGTCA 1237 >seq76481 Length=4075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 112114 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 112173 ||||| |||| || |||||||| | | ||||| |||||| || || ||||||||||| Sbjct 2371 CTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAC 2312 Query 112174 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| |||||||| || |||| ||||| || ||| Sbjct 2311 GTCTTCCTACCCATAATAACCAAATTCTGTTTACCT 2276 >seq163223 Length=4206 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 112072 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 112131 ||||| ||||||||| | || || || || || || ||||| |||| | ||| Sbjct 1999 GCCAGAAAATGAGCTCCCTGTAGAGGTTCCTTGAGTTCTCTACTGAGAACTAAAGTAATC 2058 Query 112132 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 112191 ||||| | | | || |||||| || |||||||||||||| |||||||||| ||| ||| Sbjct 2059 CTGTCCTTTAAAAGTTGATTCTTCTCAGGGATGGAGAACCAGGTCTTTCTACTCATAATC 2118 Query 112192 ACCACGTTCTGCTTGCCTCTGACTGAAGACGT 112223 || ||||| || ||| | ||||||| || Sbjct 2119 GCCCAATTCTGTTTACCT-TCTCTGAAGAGGT 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407657092232456