Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq166013 150 2e-31 seq32041 129 8e-25 seq36395 122 1e-22 seq60851 111 2e-19 seq63341 105 9e-18 >seq166013 Length=23081 Score = 150 bits (166), Expect = 2e-31 Identities = 113/133 (85%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||||||||| |||||||| ||||| | |||| Sbjct 8783 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATATTGCTGGTATACGGTTCAATAGAT 8724 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||| Sbjct 8723 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGAGCAATAAGTAAACTA 8664 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 8663 TTTCTTATACCAT 8651 >seq32041 Length=12153 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 9133 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9192 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 9193 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 9252 Query 39759 CAAC 39762 | || Sbjct 9253 CCAC 9256 >seq36395 Length=32485 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 15297 TCATCTCTGCTAATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 15356 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| ||||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 15357 AACCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 15416 Query 39761 AC 39762 || Sbjct 15417 AC 15418 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||||||||||||||| ||||||||||| || |||||||| || || | || |||| Sbjct 21440 CCAAATTTTCATTCACAATTCCATCACTGGCAGCAAAAAAGGCTAAGATGTGAGAGATAA 21499 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 ||||||| ||||| ||| | | | | ||||||| | || ||| ||||||| Sbjct 21500 AATATTTCTCATCTGGTTTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 21550 >seq60851 Length=21511 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || ||||||| | ||| |||||||| || || || || || | || || || ||||| | Sbjct 14100 CACCACTAAACACTTTCTTTGTTTCTTTATGCAAGTTAGAGACAGCAATCCTTGCTGCCA 14159 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 |||| ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 14160 GAATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTAT 14219 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | || || || || | |||| ||||| || |||||||||| Sbjct 14220 CTAGTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 14270 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || ||||| |||| | | Sbjct 2455 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGC 2514 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | || || ||||||| || Sbjct 2515 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 2574 Query 69715 TC 69716 || Sbjct 2575 TC 2576 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || || || ||||||||||| ||||||| |||||||||||||||||||| Sbjct 1997 ATATAGCTTCTCAAAGTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 2056 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 2057 CATCAAAGACCA 2068 >seq63341 Length=12409 Score = 105 bits (116), Expect = 9e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || |||||||| || || | | || || || ||||| || || || || || |||||| Sbjct 8810 TAGGTTTCATATGGGCCATGTTCTTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCGTAA 8751 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| ||||| || |||| |||||| | || || ||| |||| || || ||||| Sbjct 8750 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGAGCCTCTGGACTCTCAAAAGGATAT 8691 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | |||||||| |||||||| || || || |||||||| || || || | ||| | Sbjct 8690 CTCATCAGAATAAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 8631 Query 69136 TTATTTGA 69143 |||||||| Sbjct 8630 TTATTTGA 8623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685252731574080