Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miniopterus_20natalensis_20[refseq_20GCF_5F001595765.1_202016-03-22] 1,269 sequences; 1,803,099,001 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq828 98.7 9e-16 >seq828 Length=481723 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/114 (81%), Gaps = 6/114 (5%) Strand=Plus/Plus Query 167 CACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTT 226 |||||||||||| |||||||| |||| ||||||||||| |||||||||||||| | || Sbjct 176685 CACACACAAGATCCAAAACAGATTATGAGAAAAATTCAAAATAATTTATTAAAT-AGGTT 176743 Query 227 CAAGGGCTTCTTTAAGAAGCATTAACAA-TCTAACAACATTTTATAAATAACAA 279 | |||||| || ||| ||||||||||| ||| | ||| ||||||| ||| Sbjct 176744 CCAGGGCTCCTCCAAGGAGCATTAACAACTCTCAATACA----ATAAATATCAA 176793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/291 (68%), Gaps = 25/291 (9%) Strand=Plus/Plus Query 1475 TCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCT 1534 ||| |||||| | |||| || || || | | |||| || || |||| || |||||| Sbjct 178823 TCGGTACCTGGGCGGGAGACCATGGCGAGGGGGAGC-AGA--GCTGCTTCAGCGACAGCT 178879 Query 1535 GCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTG-TATATAAAGGGCTAGTTGTA 1593 || ||| |||||||||||| || | ||| || |||||||||||| || || Sbjct 178880 CCTTGAGCCAGATGTGCTCGCCATGGCCTCCGGG---TGATATATAAAGGGCCCGTCGTG 178936 Query 1594 AGG-AGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAA 1641 ||| |||| || | || || ||||||| || || | || ||||| ||| Sbjct 178937 AGGGAGGA-CAGTCAACGTTCCGCCCATGGCAAGATTATCGCTCAGCTTTTCTCCAGAAA 178995 Query 1642 ACA-TTTCAAAT-TTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG--- 1696 ||| ||||||| || |||| | || || | |||||| ||| ||||||| || Sbjct 178996 ACACTTTCAAAAATTCTGCCGCCCGAGGCTGAGTGAAAGCAGAGCTGGAAGGAAGTGCTG 179055 Query 1697 AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 | |||||||| ||| ||||||||||| |||| || ||| |||||| || Sbjct 179056 AGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTGCGGGCACACACAGG 179106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438553043342000