Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq63 232 5e-56 seq9 98.7 8e-16 >seq63 Length=10485012 Score = 232 bits (256), Expect = 5e-56 Identities = 403/575 (70%), Gaps = 11/575 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | ||||| |||| | ||| ||||||| |||||||| || ||||| | ||| Sbjct 8862852 GGGGATTTAGGCCCAGTTTATGTCTTTCAGTGGAAGCATTTTGGGGCAGAATACATAGAT 8862793 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | |||| | |||||| | || || ||||||| || || || ||||| Sbjct 8862792 AAGGATTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTCATTGACACAATC 8862733 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTAT-ATCGTCTTGGAATCCAAAGGATATCCC 18967 ||| ||| |||| | | || |||| || | | | || |||||||||| ||||| || Sbjct 8862732 AAACCAACCCCAACGA-CAGAAGAATCATCCTGAGTGGCT-GGAATCCAAAAGATATTCC 8862675 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | | || || ||||| || || | | || ||||||| ||| | || |||||| | Sbjct 8862674 TCTGACGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTTTGCGTGGTGAATGGTGAACT 8862615 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||||| | |||||||| || ||||| |||||||| || || || |||||||| || Sbjct 8862614 GTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGC 8862555 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | ||||| || || |||||||| | || || | |||||||| || | || || || Sbjct 8862554 CAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAGGACTAAAGCCAGGTGACTT 8862495 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT-TTAAAAGTGC 19206 | ||||| |||| ||||||||||||||| ||||||| || || ||| | ||| ||| Sbjct 8862494 CGTACATACTTTGGGAGATGCACATATTTACCTGAATCACATTGA-GCTGCTGAAAATGC 8862436 Query 19207 AGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA 19264 |||| ||| || |||| ||||| || || ||||| ||||||| || ||| Sbjct 8862435 AGCTTCAGCAAGA--ACCAAGGCCTTTCCCGAAGCTCAAAATCCTTCGAAAAGT-TGAGA 8862379 Query 19265 -TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcccccccc 19323 || | ||||| || || || |||||| |||| || || | ||| || | | Sbjct 8862378 CAATGGATGACTTCAAGGCTGAAGACTTTCAGATTGAGGGGTACAGTCCTCAACTGACTA 8862319 Query 19324 TAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | |||||||||||||| ||||| | ||||||| Sbjct 8862318 TTGAAATGGAAATGGCTGTTTAAAGTGCTTTTAAA 8862284 >seq9 Length=27295742 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| || || | | || ||||| ||||| | || ||||| | ||| Sbjct 15743333 ATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCC 15743274 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || |||||||||||||| || || || |||||||| || | Sbjct 15743273 TGCCAGCTGTACCAGAGGTCAGGGGATATGGGCCTGGGCGTGCCCTTCAACATCGCCAGC 15743214 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||||| || || |||||||| | || || | ||||| || || Sbjct 15743213 TATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTAAA 15743170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399466104923235