Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq121 309 2e-79 seq29 244 8e-60 seq63 167 2e-36 seq167 149 5e-31 seq70 138 8e-28 seq9 86.0 5e-12 >seq121 Length=6552913 Score = 309 bits (342), Expect = 2e-79 Identities = 340/449 (76%), Gaps = 5/449 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATAC-TTTT 4013 |||| || || |||||| |||||| | ||||||||||||||| ||||||||| |||| Sbjct 5102023 AAAACACCTTCACATTAATCATTCTTTTTATATACTTCAAATTTCCACTTAATACCTTTT 5101964 Query 4014 CTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAG 4073 || ||||| ||| ||||||||||||||| |||||| | ||| || |||||| | | Sbjct 5101963 TTCCTCTTGGACACCAGAAAGAACACTTGGGTATTCTGGAAGAAGCTTATATTTCCCCAA 5101904 Query 4074 ATCAAATTCTGGAAAAAAG---GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAA 4130 |||| |||||||||||| |||| | |||||| || ||||||||||| |||||||| Sbjct 5101903 ATCAGTTTCTGGAAAAAAAAATGTGTTATTTTCAAATTCCTGCATGATCCTTGTCACAAA 5101844 Query 4131 CAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTAT 4190 ||||| |||| | || | |||| |||| ||||| ||||||| ||||| | ||| Sbjct 5101843 TAGTTTGAGATGGTCTGATTTGTTCATGCCTTCCTTATAAGCAGAACTGCCTCCCACTAT 5101784 Query 4191 CCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATC 4250 ||| |||||||| ||||| |||| ||||||||| |||| |||||||||| |||||| | Sbjct 5101783 CCAAACCATGTCCACTTTCTTTGTTAATTCTGGTTGTTAAATAAGTTTTAAGGCATCACC 5101724 Query 4251 TAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC 4310 | ||| || |||| ||||||||| | ||| || | ||||| ||||| | |||||||| Sbjct 5101723 CAGACTTTTGGCTAGAAAATGAGCACCTTGTAGAGGTTCCTTGAGTTCTCTTCTGAGAAC 5101664 Query 4311 AACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAG-AACCAAGTCTTTT 4369 | | || |||| |||||| | | |||||| | |||| ||| | ||||| Sbjct 5101663 TAATTGAACTCTGTTCTTTAAAAGTCAGTTCTTTTAGGGAAGAGAGTGAGTCTGTCTTCC 5101604 Query 4370 TACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||||||| ||||||| |||| || Sbjct 5101603 GACCCATAATCACGAAATTCTATTTACCT 5101575 >seq29 Length=15480060 Score = 244 bits (270), Expect = 8e-60 Identities = 267/353 (76%), Gaps = 14/353 (4%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 ||| || |||||||||||||||||||||||||| ||||| | || || | || || | Sbjct 11134075 ATTCATCGTTCTTCTCATATACTTCAAATTTGTATTTAATTCCTTCTTCCTTCTGGACGT 11134134 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||||||| ||| | |||||| |||||||| | ||||| |||||||| Sbjct 11134135 TAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCCAAATCAATTTCTGGAA 11134185 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| ||| |||| ||||| |||||||| ||| |||||| || || Sbjct 11134186 AAAAAGTATCACTTTCAAATTCT-GCATAATCCTTGTCACAAATAGTCTAAGATGGCCTG 11134244 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCC-AATTATCCAGACCATGTCTACT 4206 | | ||| ||||| ||||| |||||||| ||||| || ||||| | |||||| ||| Sbjct 11134245 GCTTGTTCACGGCTTCCTTATAAACAGAACTGCCTCCCAACTATCCTAATCATGTCCACT 11134304 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||||||||||||| || || || |||||| ||||||| | | | | ||| | | Sbjct 11134305 TTATTTGCTAATTCTGGTTGCTCAAAAAATTTTAAGACATCATCCAGATTTTCAGCAAGA 11134364 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAAT 4319 ||||||| | | |||| | ||||| || || ||||| || | |||||| Sbjct 11134365 AAATGAGTTTCTTATGGATGTTCCTTGAGGTC---TCTGAGCACTAAATTAAT 11134414 Score = 100 bits (110), Expect = 2e-16 Identities = 89/109 (82%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||| ||||| |||| ||| ||||| || |||||||||| |||||||||||| || Sbjct 11134680 TTCTTCTCGGGAATAGAGACCCATGTCTTCCTAACCATAATCACCAAATTCTGTTTACCT 11134739 Query 4399 GGTACAGAAGATGTA-GTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||| || || ||| || |||||||||| ||||| ||| || |||||| Sbjct 11134740 TCTACTGAGGA-GTATGTGGTCATTCTTTTGAAATATTTGAACTCATTC 11134787 >seq63 Length=10485012 Score = 167 bits (184), Expect = 2e-36 Identities = 419/625 (67%), Gaps = 9/625 (1%) Strand=Plus/Plus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591 |||||||||||| | ||||| ||| | | || || | || || ||| | || || Sbjct 8862296 TTAAACAGCCATTTCCATTTCAATAGTCAGTTGAGGACTGTACCCCTC-AATCTGAAAGT 8862354 Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | || || || |||||||| || ||| |||| | | | | || | || || | Sbjct 8862355 CTTCAGCCTTGAAGTCATCCATTGTCTCAACTTTTCGAAGGATTTTGAGCTTCGGGAAAG 8862414 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAG-AGCATCAATGTGATCTACATAGATGTGA 101710 | || || | || | ||||||||| || ||| |||||||||| | || || || Sbjct 8862415 GCCTTGGTTCTTGCTGAAGCTGCATTTTCAGCAGC-TCAATGTGATTCAGGTAAATATGT 8862473 Query 101711 GCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATG 101770 |||||||| | |||||| | || || || ||| ||| |||| || ||||||||| Sbjct 8862474 GCATCTCCCAAAGTATGTACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGCAATCATG 8862533 Query 101771 CAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGAT 101830 | || | || | |||||| || ||||| || ||||| || | ||||| || |||| Sbjct 8862534 TAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCCCCTGAC 8862593 Query 101831 CTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAATTGACTTAATACATG 101889 || || ||||| || ||||| || | ||| |||| || |||| || | | |||| Sbjct 8862594 CTCTGGTACAGCTGGCAGGACAGTTCACCATTCAC-CACGCAAAACTGGCAGAGGGCATG 8862652 Query 101890 ACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCT 101949 || || || | || | |||||| ||| |||||| ||| || | || || Sbjct 8862653 GCACGGAGGGAGGGCCGTCAGAGGAATATCTTTTGGATTCCAGCCACTCAGGATGATTCT 8862712 Query 101950 TCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTC 102009 ||| || || ||| ||| ||| || || ||||| | || || | |||||| ||||||| Sbjct 8862713 TCTGTC-GTTGGGGTTGGTTTGATTGTGTCAATGACCTTTTGCAGTTGGTCTACTCCTTG 8862771 Query 102010 TCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCC 102069 ||| |||||| | | || | |||||||| || |||||| |||||||||| | Sbjct 8862772 ACCTGAATAATCTGAATCCTTATCTATGTATTCTGCCCCAAAATGCTTCCACTGAAAGAC 8862831 Query 102070 ATACACAGGTCCAAGATCTCCTTCATCTCTGTCATA-AAAACCAAGTTTATCTAAAAATG 102128 ||| || || || | ||| ||||| | ||||| | || ||||| | ||| || | Sbjct 8862832 ATAAACTGGGCCTAAATCCCCTTCTTTTCTGTTGGAGAACCCCAAGCTGTCCTAGAAGT- 8862890 Query 102129 ATCTAGATCCATTCGCATCCCAAAT 102153 || ||| ||||| |||||||| || Sbjct 8862891 CTCGAGACCCATTGGCATCCCAGAT 8862915 >seq167 Length=4688107 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 2138420 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 2138479 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 ||||| || | || || | |||||| | ||| | | | |||| || || ||| Sbjct 2138480 ATCTTTTCCAACCGGAAGCTGTGGGGGCAGTGCTGAGACTCCCTTCGCAGAACCAGGATC 2138539 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||||| ||| |||| |||||| | ||||| Sbjct 2138540 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTACCGTCCCGTCAGCACTGACACAG 2138599 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATC 27157 || | | ||| ||||| || ||||| ||||||| ||| ||||| || Sbjct 2138600 CCCAGATGGCGGCACTTGGCCTCCCAGATCACAGGGGGGTATCTCTC 2138646 >seq70 Length=9335154 Score = 138 bits (152), Expect = 8e-28 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4157 TAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTA 4216 || || | ||||| |||||||| ||||| | |||||| |||||||| ||||||||||||| Sbjct 9245885 TACCTACCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTA 9245826 Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 ||||||| || || |||||||||| |||||||| ||||| || || | ||||||||||| Sbjct 9245825 ATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTC 9245766 Query 4277 TATGTGGAAGCTCC 4290 |||||| | ||| Sbjct 9245765 CCTGTGGAGGTTCC 9245752 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||||||||| | |||||||| || ||||||||||| Sbjct 9239471 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGG 9239412 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| || ||||||||| || Sbjct 9239411 AATAGAGAACCATGTCTTTCTACCCATAATCACCAAGTTCTGTTTACCT 9239363 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 9249100 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 9249041 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || ||| | |||| ||||| Sbjct 9249040 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 9248981 Query 4165 TT 4166 || Sbjct 9248980 TT 9248979 >seq9 Length=27295742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||||||| || ||||||||||||||||| ||||| || || || | ||| ||||| ||| Sbjct 15745770 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 15745829 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 |||| | || || || | || || || || ||| ||||| |||||||| || | | Sbjct 15745830 CTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTTC 15745889 Query 102158 ACGCC 102162 || || Sbjct 15745890 ACTCC 15745894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361216933404533