Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq77 269 3e-67 seq110 140 4e-28 seq123 131 2e-25 seq40 120 4e-22 seq45 100 3e-16 seq31 93.3 5e-14 seq100 84.2 3e-11 >seq77 Length=8881903 Score = 269 bits (298), Expect = 3e-67 Identities = 265/340 (78%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | ||| | ||||| ||||||||| ||| Sbjct 1304236 AGCAGGGCTTCGATGTCAGGCTCGATATCGATGGTTGGAAAGCGGCGGCTGTACCGGCGT 1304177 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| ||||||||||||||||||||| | |||||||||| Sbjct 1304176 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGG 1304117 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || ||||||| ||| ||||| | ||||| || Sbjct 1304116 CACACGGGAGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTAGCATCGTCACTG 1304057 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGC--ACCGTTGA 83294 || || ||||| |||||||| |||||||||||||| || |||| ||||| |||||| | Sbjct 1304056 GGGGCAGGCAGAGCCTCTCGCAGGAAGGCGAAGAGAGG--GTGCGCTTGCGCACCGTTCA 1303999 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 ||||||||||||| || ||| | ||||| |||||||| ||| || || ||||||| || Sbjct 1303998 CCTCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACT 1303939 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | |||||| || ||||||| | |||| ||||| ||||| Sbjct 1303938 TGAGGGAATTCAGGATCTCGTCGTTCTTAGCGTTCTCCTG 1303899 Score = 178 bits (196), Expect = 2e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| |||| ||||| | || |||| Sbjct 1303616 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACAACCAAGCCCCGGGGCCCGAGGC 1303557 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||||||||||| ||||| ||||||||||| | |||||||| || || | Sbjct 1303556 GCCGCTGCAGCTCGTTCATCTCGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGATGCCA 1303497 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| ||| | || | ||||| || || || ||| Sbjct 1303496 CATTCTCGATGAGCAGCACCTTGCCCCGCAAGGAACCCAGGCTCAGGGGCTCCCCGCCGC 1303437 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || ||||| || ||||| || Sbjct 1303436 CCAGCGGGCGCGCGGAGAAAGCATACACGGA 1303406 >seq110 Length=7020514 Score = 140 bits (154), Expect = 4e-28 Identities = 230/324 (71%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||| ||||| |||| | || || ||||||| ||||||||| ||||| | || ||| Sbjct 3557722 ACCTACGCACAGGCGCACGGTTCGCGCCCACCAGGAACTTCTCCAAGTTGCGGGTGACGA 3557663 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGG--GGTCGCTCACG-AGCGTGCTC 83224 | ||||||||||||||||||||| |||| | || | |||| | | | |||| || Sbjct 3557662 GGCTGCGGCACACTGGAGACCAGGGGATGAACGTGAGCAGGTCCCCAATGCAGCGGGC-- 3557605 Query 83225 ATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCG-GATGTGCCCT 83283 ||| ||||| || ||||||| ||||| | || ||||||| ||||| | || ||| Sbjct 3557604 --GTCCTCGCTGGGTCCCGGCAGAGCCTCAC-CAGAAAGGCGAGGAGCGCGGTGCGCCTG 3557548 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 || || || || ||| | || | ||||||| | ||| |||||||| || | | ||| Sbjct 3557547 CGCGCCCTTTAC--CGCGCCTCCCCAAGAGCAAGAGGTTGGGCTCGAACCCACTGCGAGG 3557490 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 |||| | | | |||||| || |||||| |||| |||||| ||||| | | ||| Sbjct 3557489 TAGGACATACCTGAGGGAATTCAGGATCTCTTGGTTCTTGGCGTTCTCCTGAAGCCTGAA 3557430 Query 83404 CTGGTTACACGGGAACCCAAGCAC 83427 || |||||||| || ||||| Sbjct 3557429 ATGCAAGCACGGGAAGCCGAGCAC 3557406 >seq123 Length=6500314 Score = 131 bits (144), Expect = 2e-25 Identities = 377/570 (66%), Gaps = 45/570 (8%) Strand=Plus/Minus Query 83058 GCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGC-GGTGGCTGTACCTGCGC 83116 || ||| ||||||| | ||||| | || ||| | | | || |||||||||| ||| Sbjct 4894457 GCTGGGGCTCGATGCCAGGCTCTCTGTCCTTGGTTAGAAATCAGGAGGCTGTACCTACGC 4894398 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| || || | ||||||| |||||||| ||||||||| |||| ||| || Sbjct 4894397 CCAGGCACACCCTCTGGGCCCACCAGGAACTTCT---AGTTCCAGGTGCCGTCCTTGGGG 4894341 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||| |||| |||| || |||||| | |||| | ||| || || Sbjct 4894340 CACACCTGAGATCAGGTGATGAACTTGGGGTCCGTTCTGAGCTCAGTGGTGTGATCACTG 4894281 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGA-GCGGATGTGCCCTTGCACCGTTGAC 83295 || || ||||| | | | || | ||||||||||| |||| || | ||| | Sbjct 4894280 GGGGCGGGCAGAGTCCC-CGCACGAAGGCGAAGACGCGG---------TGAGCTGTTTCC 4894231 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355 ||| ||||||| || ||| | ||| | |||||||| ||| | || | |||||| || Sbjct 4894230 CTCT-ACTTCTCAAAAAGCGTCAAGGTGGGCTCGAACCCGCTGCCGGATGGGACGTACTC 4894172 Query 83356 CAGGGAAGGCAAGATCTCGG-----CATTCTGGGCGTTT--TCCTGGTGACCG----AAC 83404 |||| | || |||||| | ||| ||||| | ||||| || | ||| Sbjct 4894171 AAGGGGATTCAGGATCTCTCTTCTTCGTTCCTGGCGTCTCCTCCTGATGCATGCATGAAC 4894112 Query 83405 TGGTTACACGGGAACCCA--------AGCACTACCAGCCCCC-GAGCTCCTAGGCGCCGC 83455 ||||| ||| |||| ||| ||||| ||||| | || ||| | |||| |||| Sbjct 4894111 TGGTTGCACCGGAAGCCAGGAAGCTGAGCACCACCAGTCTCCTGAGG-CGGAGGCCCCGC 4894053 Query 83456 TGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA-CGCTACGTT 83514 |||||||||| ||| || | | | |||||||| || | |||||||| || || || || Sbjct 4894052 TGCAGCTCGTCCATTTGGGCGGAGTCCCGGACTGTTGTGCCTCAGAGAGAGGGCCACATT 4893993 Query 83515 CTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAAT 83574 ||| ||| ||| | |||| | || | | ||| | || || || | || | Sbjct 4893992 CTC----AGC---ACCTTGTCCCGCGGGGAGGCCAGGCTGCCGGGCTCCCCGCTGGCCAG 4893940 Query 83575 CGGGCGTGCTGAGAAGGCGTACACAGATCT 83604 || || || |||||||| | |||||| || Sbjct 4893939 AGGACGCGCAGAGAAGGCCTGCACAGAGCT 4893910 >seq40 Length=13248482 Score = 120 bits (132), Expect = 4e-22 Identities = 192/268 (72%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| | | || ||| ||||||||| ||| ||| Sbjct 2005406 GCAGCTGCGCAGCATCTACGAGAGCAGTCTG-TCCATCGGCAACTTCGCCTCGCGCCTGC 2005348 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 2005347 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 2005288 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 2005287 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 2005229 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| ||||| ||| | | ||||| ||||| |||| ||||| ||| Sbjct 2005228 GTGCAGCTGCTCTACCCGCGCGCCAAG-AACGACCGCGTCTGGACGCTGGAGTTCGTGGG 2005170 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGC 50674 ||||||||||||||||| |||||| Sbjct 2005169 CAAGCTGGACGAGCGCTGCCGACGCCGC 2005142 >seq45 Length=12897991 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 83097 AGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGT 83156 || ||||||||||||| | ||| ||| | || | || |||| ||||||| ||||| Sbjct 6752102 AGTGGTGGCTGTACCTACACACAGGCAAATCATCTGGGCC-ACCAGAAACTTCTTGAAGT 6752160 Query 83157 TCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGA 83216 |||||| | ||| |||| |||| ||||||||||| ||| || || |||| ||| || Sbjct 6752161 TCCAGGTGATGTCATTGCATCACATTGGAGACCAGGTGATGTACTTGGTGTCGGTCATGA 6752220 Query 83217 GCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGAT 83276 | | | || || || || || |||| || || ||||||||| ||| | || | Sbjct 6752221 GTGCAGTGGCATCATCACTGGGGGCAAGCAGAGCTTCATTTAGGAAGGCAAAG-GGGGGT 6752279 Query 83277 GTGCCCTTGCACCGTTGACCTCGCACTTCTCGAA 83310 || | ||||| || |||||||||||||| || Sbjct 6752280 ATGTCTGCGCACCATTCACCTCGCACTTCTCAAA 6752313 >seq31 Length=15004953 Score = 93.3 bits (102), Expect = 5e-14 Identities = 193/285 (68%), Gaps = 22/285 (8%) Strand=Plus/Minus Query 83099 CGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTC 83158 || |||||| || ||| ||| | | |||| || | ||||||| || |||| Sbjct 68247 CGATGGCTGGAC-TGCACACAGACATGCCATCTGGGCCCACCAGGAT---------GTTC 68198 Query 83159 CAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC 83218 ||||| || ||||||||||| |||||||||| | |||| |||||||| ||| || Sbjct 68197 CAGGCGACATCGTTGCGGCAGACTGGAGACCGTGTGATGAAGTGGGGGTCAGTCATGAAG 68138 Query 83219 GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGT 83278 | | ||| ||| | || | ||||| || ||||||| ||||| ||| || Sbjct 68137 GCAGTGGTGTAGTCATTGGGGCCAGGCAGAGC-------AGGAAGGTGAAGA--GGAGGT 68087 Query 83279 GCCCTTG--CACCGTTGACCTCGCACTTCTC-GAAGAGCATAAAGTTCGGCTCGAAGCCG 83335 || | || ||| || |||||||||||||| || || || | | | |||||||| ||| Sbjct 68086 GCACCTGCACACACTTCACCTCGCACTTCTCAAAAAAGGATGAGGGTGGGCTCGAACCCG 68027 Query 83336 TTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 | || | || || ||| |||||| || ||| || ||||| Sbjct 68026 CCACTGGGTCAGAGGTCCTTGAGGGAATTCAGGATGTCTTCATTC 67982 >seq100 Length=7403280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 83365 CAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAG 83424 || |||||| || || |||| | | |||||| | | | |||| |||||||| || || Sbjct 4610646 CACGATCTCAGCCTT---GGCGGTCTTCTGGTGTCTGCCCGGGTTGCACGGGAAGCCGAG 4610702 Query 83425 CACTACCA-GCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCC 83483 |||||||| || |||| || ||| |||||||||||||||||| | | |||| || || Sbjct 4610703 CACTACCAAGCACCCGG---CCGAGGAGCCGCTGCAGCTCGTTCA-CAGGGTGTCCTGCC 4610758 Query 83484 GGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 | ||| | |||||||| || || || |||| ||||| Sbjct 4610759 CCAGCGTCGTGCCTCAGAGCGAAGCCACCCGCTCGGCGAGCA 4610800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608737571681320