Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq65 107 1e-18 seq101 102 5e-17 seq50 100 2e-16 seq39 89.7 3e-13 seq125 86.0 4e-12 >seq65 Length=10028950 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 4318395 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 4318336 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| || || |||| ||||||||| ||| | || |||||| || Sbjct 4318335 TCTAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCT 4318276 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || | || | | || || |||| |||||||| Sbjct 4318275 TGGATCTTGGCCTTTACATTTTCAATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTC 4318216 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| ||||||||||| Sbjct 4318215 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4318184 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||| || | || |||||||| |||||||| || || Sbjct 4318182 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 4318123 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || |||| ||||||||| ||| Sbjct 4318122 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 4318063 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| | ||||| || | || | || | | || || Sbjct 4318062 ATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCACC 4318003 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 4318002 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 >seq101 Length=7325712 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||||| || ||||| || | ||| ||| ||||| |||||||| || || Sbjct 127569 CCACCTCTCAGCCAAAGGACCAGATGCAGAGTGGATTCGTTCTGGATGTTGTAATCAGAA 127628 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 127629 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 127688 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||||| | || | || | || | | || || Sbjct 127689 ATGCCCTCCTTATCTTGGATCTTG-GCTTTCACATTTTCAATGGTGTCACTAGGCTCCAC 127747 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 127748 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 127795 >seq50 Length=12588045 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || | | | || Sbjct 11770190 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 11770249 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| ||||| | || ||| || || Sbjct 11770250 TCTAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTC-ACGGGGATGCCCTCTTTATCT 11770308 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || | || | | || || |||| |||||||| Sbjct 11770309 TGGATCTTGGCCTTTACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 11770368 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| ||||||||||| Sbjct 11770369 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 11770400 >seq39 Length=13401118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 1513495 AGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCC 1513436 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| ||| | || ||||||||| Sbjct 1513435 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1513376 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 1513375 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1513316 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||| ||||||||||| Sbjct 1513315 TTACCCGTCAGGGTCTTCACGAAGATCTGCAT 1513284 >seq125 Length=6462000 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || |||| || ||||| ||| | || |||| ||| ||||| | ||| Sbjct 2357465 TCTTTCTGGATATTGTGATCTGACAGAGCGCGGCCATCTTCCAGCTGTTTGCCCACAAAA 2357524 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || | |||||| || ||| | || ||||||||| | || ||| ||||| | || Sbjct 2357525 ATCAGACACTGCTGATCAGGGGGGATGCCCTCCTTGTCTTCGAT-TTTGGCTTTGACATT 2357583 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || || | |||||||| ||||| || || || |||| Sbjct 2357584 CTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAT 2357643 Query 34378 AAAGATCTGCATCGCT 34393 |||||||||||| || Sbjct 2357644 GAAGATCTGCATCTCT 2357659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323041354904480