Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 6e-11 >seq2 Length=40953715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 19232356 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 19232415 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||| Sbjct 19232416 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 19232475 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | |||||||| || ||| | | ||| || | | | | || Sbjct 19232476 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACATTTTCTATTGTA 19232535 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | || ||| | || || || | |||||||| ||||| ||| Sbjct 19232536 TCCGAGGGTTCAACCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGC 19232595 Query 18324 AT 18325 || Sbjct 19232596 AT 19232597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308017206335