Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq133 107 2e-18 seq2 107 2e-18 seq323 105 6e-18 seq125 95.1 1e-14 seq17 93.3 4e-14 >seq133 Length=6340249 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 5009197 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTT 5009138 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || || || ||||| ||||||||||| || Sbjct 5009137 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAGTCTTTGTAAAGCATGTACGGGGTA 5009078 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 5009077 CCTGTCTCTGTCTGAGACTCAATGATGGC 5009049 >seq2 Length=40953715 Score = 107 bits (118), Expect = 2e-18 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||||||||| || || || || || || || || |||| |||||||| || Sbjct 19232597 ATGCAGATTTTCGTAAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCG 19232538 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || || || ||| | |||||||||||| | || || || || Sbjct 19232537 GATACAATAGAAAATGTGAAGGCAAAGATTCA-GGACAAGGAAGGAATTCCTCCTGATCA 19232479 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| || ||||||| | | | ||| || || || | Sbjct 19232478 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACA 19232420 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 19232419 ACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 19232380 >seq323 Length=1159590 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| |||||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 303624 TCAAA-ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 303566 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | || || | || || ||||| ||| | || ||| Sbjct 303565 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCC 303506 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || |||||||| ||| ||||||| ||| | ||| Sbjct 303505 GACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 303446 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| || ||||| || ||||| || | |||||||| || Sbjct 303445 TACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCCTGAGGGGTGG 303393 >seq125 Length=6462000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||| | ||||| ||||||||||| || |||||| | || ||||| || | Sbjct 2357655 ATGCAGATCTTCATGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 2357596 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| | |||||||| ||| | || || || ||| Sbjct 2357595 GACACCATTGAGAATGTCAAAGCCAAAATCGAAGACAAGGAGGGCATCCCCCCTGATCAG 2357536 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| |||| || || | ||||||||| ||||||| Sbjct 2357535 CAGTGTCTGATTTTTGTGGGCAAACAGCTGGAAGA 2357501 >seq17 Length=19722643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| ||||| ||||| || |||||||| || |||||| | ||||| ||| | Sbjct 6749426 GCCTTCGCTGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCTGGCTC 6749485 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||||||||||||||||||| ||||| |||||| ||| || Sbjct 6749486 AAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 6749526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445723032501360