Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06-
02] 7,783 sequences; 2,410,879,678 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq133 122 1e-22
seq17 111 2e-19
seq35 104 3e-17
seq141 98.7 1e-15
>seq133
Length=6340249
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 5017079 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 5017020
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 5017019 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 5016960
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 5016959 CTGTTTCTTATACCATA 5016943
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || ||||| || || | || || || | | ||| || || || || || || |
Sbjct 5012397 CATAGGTTTCATACGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 5012338
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| ||| || || || ||||| || || ||||| ||||
Sbjct 5012337 AATAAATGGTTTCAAAGATCTGCTTGTTCAGTAGCTGGGCTTCTGGACTCTCAAACGGAT 5012278
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || || || || || || | ||| |
Sbjct 5012277 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 5012218
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 5012217 GTTTATTTGA 5012208
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| || ||||| ||||||||||| || | || || || || | |
Sbjct 5007644 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 5007585
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 5007584 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 5007525
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 5007524 AGGCTCCAGGTAAATAGC 5007507
>seq17
Length=19722643
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| || || | ||| || ||||||||||| || ||||| ||||| || || |
Sbjct 6749546 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6749487
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || ||||| ||||
Sbjct 6749486 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 6749427
Query 33724 C 33724
|
Sbjct 6749426 C 6749426
>seq35
Length=14402153
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| ||| | ||||| || || |||||||||| || |||
Sbjct 12209311 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCGTTTATACTGACTACTGCTGTATTT 12209370
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600
|||| | |||||| | |||||| ||||| |||||||||||||| ||| |||
Sbjct 12209371 CTTGGTTTGACTATGTATACTCTGCAATCTAAGAGAGATTTCAGCAAATTTG 12209422
Score = 86.0 bits (94), Expect = 8e-12
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299
|| |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | |||
Sbjct 12202834 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACA 12202893
Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343
||||| | |||||||||||||| | || |||||| || ||||
Sbjct 12202894 GCTGCTTTTTTTTTATACTTTGAGTCTATACGGACAGTTGTACA 12202937
>seq141
Length=6018405
Score = 98.7 bits (108), Expect = 1e-15
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| ||||||| || ||||||
Sbjct 2329413 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCCAATATGTGAGAGATAAAA 2329354
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || |||| | | || || ||||| | | || |||||| ||||
Sbjct 2329353 TACTTCTCCTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATA 2329305
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || |||||||| ||||| ||||| || || | || ||
Sbjct 2339024 TCATCTCTGCTGATGAGTTCATTGGAAAACGTAAGTCCAGGCATGAGACCTCTTTTCTTT 2338965
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||||||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 2338964 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 2338906
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| |||||| |
Sbjct 2325598 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGGG 2325539
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
||||||||||| || || || ||||
Sbjct 2325538 TATTGGATTGGAAAGATGACGAATC 2325514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629756326620240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |