Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq65 116 4e-21 seq161 102 8e-17 seq2 98.7 1e-15 seq323 95.1 1e-14 seq101 93.3 4e-14 seq237 89.7 5e-13 seq39 89.7 5e-13 seq50 86.0 6e-12 >seq65 Length=10028950 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||||||||| || ||| Sbjct 4318152 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 4318093 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||||||||| ||| || | ||| Sbjct 4318092 GCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTGTCCTTT 4318033 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | || | ||||||||||||| || Sbjct 4318032 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 4317973 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 4317972 TTCACGAAGATCTGCAT 4317956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 4318401 AAACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 4318342 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || || ||| |||| || | ||||| || || || ||||| || Sbjct 4318341 CCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 4318282 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || ||| || |||| | ||| | ||||| | ||||||||||| | ||| Sbjct 4318281 TTATCTTGGATCTTGGCCTTTACATTTTCAATGGTGTCACTAGGCTCCACCTCCAGGGTG 4318222 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| |||| || || ||||| || ||||| Sbjct 4318221 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4318184 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||| || | ||||| || || || ||||| |||||| Sbjct 4317675 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4317616 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 4317615 TCTTGGATCTTGGCCTTCACATTATCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4317556 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||||| || || ||||| || ||||| Sbjct 4317555 GTCTTGCAGGTCAGGGTCTTCACGAAAATCTGCAT 4317521 >seq161 Length=5000004 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 410105 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 410046 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| |||| || | ||||| || || || ||||| || || Sbjct 410045 ATCTTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 409986 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || ||| | | ||| | ||||| ||||||||||||| | ||| | Sbjct 409985 ATCTTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 409926 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 409925 GGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 409890 >seq2 Length=40953715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 19232395 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 19232453 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| ||||| ||| | | Sbjct 19232454 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCC-TGAATCT 19232512 Query 139681 TTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| || | | ||| | ||| || | ||| || ||||| | || | ||||| || | Sbjct 19232513 TTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGGTCTTCCCCG 19232572 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||||||||| || ||||| Sbjct 19232573 TAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq323 Length=1159590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 303405 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 303464 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||| || | ||||| ||||| || ||||| || || Sbjct 303465 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTA 303524 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 303525 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 303584 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 303585 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 303619 >seq101 Length=7325712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 127809 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 127868 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||| || | ||||| ||||| || ||||| |||||| Sbjct 127869 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTG 127928 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || ||||| || |||||||||| | ||| | Sbjct 127929 TCTTGGATCTTGGCCTTCACATTCTCG---GTGTCACTGAGCTCCACCTCCAGGGTGATG 127985 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 127986 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 128020 >seq237 Length=2526385 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| ||| | ||||| || ||||| || || ||||| || ||| || |||| | Sbjct 2103808 AAGCGCAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 2103867 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || |||||||| || ||| |||||| | ||||| || || || ||||| ||| Sbjct 2103868 CCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCT 2103927 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || || || ||| | | || | ||||| ||||||||||||| | ||| Sbjct 2103928 TTCTCTTGAATCTTCCCTTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2103987 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | ||||| || |||| || || ||||| Sbjct 2103988 ATGGTCTTACCCGTCAGGGTCTTCACGAA 2104016 >seq39 Length=13401118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| | || || |||||||| ||| Sbjct 1513480 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCA 1513421 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 1513420 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1513361 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 1513360 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCCGTCAGGGTC 1513301 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1513300 TTCACGAAGATCTGCAT 1513284 >seq50 Length=12588045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| ||||| | ||| Sbjct 11770642 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCA 11770701 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||||||| | || ||||| ||||| Sbjct 11770702 TCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGATCGTGGGGGATGCCCTCTTTA 11770761 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| |||||||||||| | ||| | Sbjct 11770762 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCATTGGGCTCCACCTTCAAGGTGATG 11770821 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 11770822 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 11770856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 11770186 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCC 11770245 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || | ||||| || | || ||||| ||||| Sbjct 11770246 ATCTTCTAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCACGGGG-ATGCCCTCTTT 11770304 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || |||| | ||| | ||||| ||||||||||||| | || | Sbjct 11770305 ATCTTGGATCTTGGCCTTTACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGAT 11770364 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 11770365 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 11770400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496015739173600