Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17 132 7e-26 seq133 116 5e-21 seq141 102 1e-16 >seq17 Length=19722643 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 6749546 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6749487 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || |||||||||||||||||||| || || || |||| Sbjct 6749486 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 6749427 Query 50102 CAACAA 50107 | |||| Sbjct 6749426 CCACAA 6749421 >seq133 Length=6340249 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 5017079 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 5017020 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 5017019 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 5016960 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 5016959 CTGTTTCTTATACCATA 5016943 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| || ||||| || || || || ||||| ||| Sbjct 5012395 TAGGTTTCATACGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCATAA 5012336 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| ||| || || || |||||| | || ||||| ||||| Sbjct 5012335 TAAATGGTTTCAAAGATCTGCTTGTTCAGTAGCTGGGCTTCTGGACTCTCAAACGGATAC 5012276 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 5012275 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGCGT 5012216 Query 79480 TTATTAGA 79487 ||||| || Sbjct 5012215 TTATTTGA 5012208 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| || ||||| ||||||||||| || | || || || |||| | || Sbjct 5007640 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 5007581 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 5007580 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 5007521 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 5007520 TCCAGGTAAATAGC 5007507 >seq141 Length=6018405 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| ||||||||||| ||||| ||||| || || | || || Sbjct 2339024 TCATCTCTGCTGATGAGTTCATTGGAAAACGTAAGTCCAGGCATGAGACCTCTTTTCTTT 2338965 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| || || || ||||| || |||||||| || ||||| || Sbjct 2338964 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCT 2338905 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 2338904 ACCACTCTTTCCCC 2338891 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| |||||| | Sbjct 2325599 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 2325540 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 ||||||||||| || || || |||| Sbjct 2325539 GTATTGGATTGGAAAGATGACGAATC 2325514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718198921424120