Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 seq65 100 3e-16 >seq2 Length=40953715 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 19232385 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 19232443 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| |||| Sbjct 19232444 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGT 19232503 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| ||| || | | ||| | || |||| |||||| || || | ||| | | Sbjct 19232504 CCTGAATCTTTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGG 19232563 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||||||||| || ||||| Sbjct 19232564 TCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq65 Length=10028950 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || ||||| || ||||||||||| | |||| Sbjct 4318170 CGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 4318111 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || |||||| |||| || | ||||| || || || |||||||||||| Sbjct 4318110 TCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTG 4318051 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || | |||| | ||| | ||||| |||| || || || | ||| | Sbjct 4318050 TCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 4317991 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| || || ||||| || ||||| Sbjct 4317990 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506965073836560