Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq63 136 6e-27 seq17 87.8 3e-12 >seq63 Length=10485012 Score = 136 bits (150), Expect = 6e-27 Identities = 334/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 || ||| || ||||| |||| || ||| | || ||||| || | || ||||||| ||| Sbjct 8862873 GGGTTCTCCAACAGAAAAGAAGGGGATTTAGGCCCAGTTTATGTCTTTCAGTGGAAGCAT 8862814 Query 70106 TCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG 70165 | || | | || |||| || |||| ||||| ||||| || || || ||| || Sbjct 8862813 TTTGGGGCAGAATACATAGATAAGGATTCAGATTATTCAGGTCAAGGAGTAGACCAACTG 8862754 Query 70166 CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCA 70225 || | |||||||||| |||| ||||| || | || || || ||| | || | Sbjct 8862753 CAAAAGGTCATTGACACAATCAA-ACCAACCCCAACGACAGAAGAATCATCCTGAGTGGC 8862695 Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGT 70283 |||||||| |||| | | | | ||| || || ||||| || || | || |||| Sbjct 8862694 TGGAATCCAAAAGATATTCCTCTGACGGCCCTCCCTCCGTGCCA-TGCCCTCTGC-CAGT 8862637 Query 70284 TTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCC 70343 ||| | | |||| || |||| ||| |||| |||||| | |||||||||| Sbjct 8862636 TTTGCGTGGTGAATGGTGAACTGTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCC 8862577 Query 70344 TCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTA 70403 | || || ||||| ||||| || |||||| | || | || |||||||||| ||||| | Sbjct 8862576 TGGGCGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCA 8862517 Query 70404 CCGGCCTGAAAGCGCA--CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAA 70461 | || || ||||| || || |||||||| || | || || || || | || | || Sbjct 8862516 CAGGACT-AAAGC-CAGGTGACTTCGTACATACTTTGGGAGATGCACATATTTACCTGAA 8862459 Query 70462 TCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGA 70521 |||||| |||| | || |||| || | | || || || ||||| || ||||| | Sbjct 8862458 TCACATTGAGCTGCTGAAAATGCAGCTTCAGCAAGAACCAAGGCCTTTCCCGAAGCTCAA 8862399 Query 70522 GTTTGCTCGTAAAGTTGA 70539 | ||| |||||||| Sbjct 8862398 AATCCTTCGAAAAGTTGA 8862381 >seq17 Length=19722643 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| ||||| ||||| || || ||||||||||| ||| ||||||| | || || ||| Sbjct 6749423 GTGGCCTTCGCTGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCTGG 6749482 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||||||| ||||| || ||||| || || ||| Sbjct 6749483 CTCAAGAAACGCGGCCTGATGCCTGGCCTCACG 6749515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740987104203080