Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq65 89.7 4e-13 >seq2 Length=40953715 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 19232371 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 19232430 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 19232431 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 19232490 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| ||||| ||| ||| ||||||| ||||| ||| || Sbjct 19232491 ATTCCTTCCTTGTCCTGAATCTTTGC-CTTCACATTTTCTATTGTATCCGAGGGTTCAAC 19232549 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || || |||||||| ||||| ||||| Sbjct 19232550 CTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq65 Length=10028950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | | || | ||| |||||||| ||||| || ||||||||||| Sbjct 4318184 TGCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 4318125 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| | || |||||||| | || | | || ||||| | Sbjct 4318124 AAAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGG 4318065 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||||||||| || ||| ||||||| |||| ||||| || || || | Sbjct 4318064 GGATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCA 4318005 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || ||||| || || || || || ||||| Sbjct 4318004 CCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362144845378803