Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq65 102 5e-17 seq2 102 5e-17 >seq65 Length=10028950 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||||| || |||||||| || || ||||||||||| | | || | Sbjct 4318170 CGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 4318111 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| ||| ||| || | | |||||||| | ||| ||||||||||| Sbjct 4318110 TCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTG 4318051 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| | ||||| ||| ||| ||||| |||| | || |||||||| || Sbjct 4318050 TCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 4317991 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || ||||| || |||||| Sbjct 4317990 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 4317955 >seq2 Length=40953715 Score = 102 bits (112), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||||| | || || Sbjct 19232385 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 19232444 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 19232445 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC 19232504 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 |||| |||| | || ||| || || || ||||| ||| || ||||| || Sbjct 19232505 CTGAATCTTTGCCT---TCACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAAT 19232561 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| |||||||||||||| ||||| Sbjct 19232562 GGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318747362251134