Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq54 109 5e-19 >seq54 Length=12252720 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| ||||| |||||||| ||||| ||| | || ||||| ||||| ||||| Sbjct 675194 GGTTGCCAAGCCCTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGATGCCCCAGGCC 675253 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || |||| || || | || || ||||| || || ||||| |||||||||||||| Sbjct 675254 GAGAACCACGACCCAGAAGTCAAGGAGCACGTGAACTCGCTGGGGGAAAAGCTGAAGACC 675313 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 || | || | ||||| ||||| Sbjct 675314 CTGCGGCTGAGGCTGCGGCGCTG 675336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || ||||| || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 677660 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 677719 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 677720 TAGAAACCTACATG 677733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430013607055496