Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq287 87.8 9e-13 seq400 82.4 4e-11 seq76 82.4 4e-11 seq47 82.4 4e-11 >seq287 Length=1644148 Score = 87.8 bits (96), Expect = 9e-13 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 192233 AATAAAAAG---AAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 192289 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||| |||||||||||||| ||||| || Sbjct 192290 CACGCTCTAACCAACTGAGCTAACCGGCCGACG 192322 Score = 86.0 bits (94), Expect = 3e-12 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||| ||||| |||||| | |||||||||| ||||||| ||||||||||| Sbjct 473196 ATAGAAAA-CAAATCACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 473254 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 || ||||||| |||||||||||||| |||| | |||| Sbjct 473255 ACCACGCTCTAACCAACTGAGCTAACCGGCCAACCACGA 473293 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 227626 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 227567 Query 11528 CCG 11530 ||| Sbjct 227566 CCG 227564 >seq400 Length=547227 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 411956 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 412015 Query 11528 CC 11529 || Sbjct 412016 CC 412017 >seq76 Length=8897836 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6124096 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6124037 Query 11528 CC 11529 || Sbjct 6124036 CC 6124035 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6151821 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6151880 Query 11528 CC 11529 || Sbjct 6151881 CC 6151882 >seq47 Length=12852284 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2141988 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2142047 Query 11528 CC 11529 || Sbjct 2142048 CC 2142049 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261466396170508