Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq403 178 2e-39 seq218 125 1e-23 >seq403 Length=533493 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || | ||||| ||||| | || ||| ||| ||||| || || ||||||| Sbjct 188589 ATGAGCCGGCTCGTCTGGAACAGACGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGC 188648 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||||||||| ||||||| |||||||| || || |||||||| ||||||||| Sbjct 188649 ACATCACACACTCTGTTATGTTCCCGCAGCCAGATCGTGGCATACATCATCAGACCAGGC 188708 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | |||| | ||| || || | ||| || Sbjct 188709 ACCAGCCCAAAGACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGGGGTGGG 188768 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||||| ||||||||| | ||| ||||||| || || ||||| | | Sbjct 188769 TAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACC 188828 Query 9862 TGA 9864 ||| Sbjct 188829 TGA 188831 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| | || |||||| ||| ||| | || Sbjct 189602 TCTTACCCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGCTTATGATCTGTCTTGAA 189661 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| ||||||| |||||||| | || |||||||||||||| Sbjct 189662 AAATTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGATC 189721 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 189722 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 189781 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 189782 TTTCTTGCCTGAAAAATGAGAA 189803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 187995 CTTACCCTGCCAGCAATTTGCCTGCTGAAGGATTCCACAAACTGGGTAAGCCCATGTTCC 188054 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | ||||| || |||||||| || || | | | | |||| | ||| || | Sbjct 188055 AGCAGTATAGAGTTGTTGTAGACAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 188114 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| || | ||||||||| || | | |||||||||| | | ||||| Sbjct 188115 AAAGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACGG 188174 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 |||||||||||||| | | ||| ||||| || || | |||| || || ||||| Sbjct 188175 TTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 188233 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || | ||||| ||||| Sbjct 188234 ATAGCCACTCAAGTGCTGTACATA 188257 >seq218 Length=3091361 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || |||||||| || |||||||| | || | Sbjct 70553 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTGCTCGGCTTCCAGTACTCTGGAG 70612 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 70613 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 70672 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||||||| || ||| |||| | | || | ||| ||||||| Sbjct 70673 TCTCCCCAAAGATGGAGTTGGGATGGCACTTCTCCAGAAGCAGCCCTGGGTAGAACTCCA 70732 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || ||||||||||| || || Sbjct 70733 AGGCATCGATGTCTCCATACAG 70754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708455869393520