Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq39 116 3e-21 seq237 98.7 9e-16 seq65 89.7 5e-13 seq18 89.7 5e-13 seq50 86.0 6e-12 seq101 84.2 2e-11 >seq39 Length=13401118 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || ||||| || | ||| || ||| | Sbjct 1513510 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1513451 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||||||||||||||| || ||||||| || || ||||| || || || Sbjct 1513450 AGGGTGCGCCCATCCTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1513391 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1513390 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1513331 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 1513330 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 1513284 >seq237 Length=2526385 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || || || ||||| |||| |||| ||| | ||| || ||||| || | || Sbjct 2103788 AACTTAAGACACCACCCCTCAAGCGCAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGT 2103847 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || ||| || ||| ||||||||||||||| ||| ||||||| || || |||| Sbjct 2103848 TGTAGTCGGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCT 2103907 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | || || || || || ||||| || | ||| || | || || ||| |||||| Sbjct 2103908 GGTCAGGGGGGATGCCCTCTTTCTCTTGAATCTTCCCTTTCACATTCTCGATGGTGTCAC 2103967 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | | || || || | |||||||| || || || || || ||||| || Sbjct 2103968 TGGGCTCCACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTCACGAA 2104016 >seq65 Length=10028950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| || || || || || | ||| ||||| Sbjct 4318182 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 4318123 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || || ||||||| | || ||||| || || || Sbjct 4318122 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 4318063 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || |||| || | | |||||| | | || || Sbjct 4318062 ATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCACC 4318003 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||| ||||||||||||| Sbjct 4318002 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 4317954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| || | |||| ||| | ||| || || || || | ||| ||||| Sbjct 4318410 CCACCCCTCAAACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 4318351 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || || ||||||| | || ||||| || || || Sbjct 4318350 AGAGTGCGGCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 4318291 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || | | |||||| | || || Sbjct 4318290 ATGCCCTCCTTATCTTGGATCTTGGCCTTTACATTTTCAATGGTGTCACTAGGCTCCACC 4318231 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||| ||||||||||||| Sbjct 4318230 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 4318182 >seq18 Length=19408490 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| || ||||||| | ||| | ||||| |||||||| ||||| || Sbjct 14614797 ATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCTCT--TGATCAGGAGGAATTCCTTCCTT 14614854 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| | ||||| || || | || || | | | || || |||| | ||| Sbjct 14614855 ATCCTGAATGTCGGCCTTTACATTTCCTATTGTATCCGAGAGTTCAACCTCAAGAGGGAT 14614914 Query 94972 GGTTTT-TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || |||| |||| ||||||||||| | |||||| Sbjct 14614915 GGTCTTCTCCA-TAAGGGTTTTCACAAAAACCTGCAT 14614950 >seq50 Length=12588045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||| | ||| || || || || | ||| ||||| Sbjct 11770175 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 11770234 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| ||||||| | || ||||| || | ||| Sbjct 11770235 AGAGTGCAGCCATCTTCTAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCACGGGGA 11770294 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 | || ||||| || | || || ||||| || | | |||||| | | || || Sbjct 11770295 -TGCCCTCTTTATCTTGGATCTTGGCCTTTACATTTTCAATGGTGTCACTGGGCTCCACC 11770353 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||| ||||||||||||| Sbjct 11770354 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 11770402 >seq101 Length=7325712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| | | |||| |||| ||| ||||| || || | ||| ||||| Sbjct 127569 CCACCTCTCAGCCAAAGGACCAGATGCAGAGTGGATTCGTTCTGGATGTTGTAATCAGAA 127628 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 127629 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 127688 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || || || || | | |||||| | || || Sbjct 127689 ATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCACTAGGCTCCACC 127748 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||| ||||||||||||| Sbjct 127749 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 127797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247586869880