Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq51 132 8e-27 seq287 127 3e-25 seq400 118 2e-22 seq237 118 2e-22 >seq51 Length=12449842 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||| ||||| || || Sbjct 9143655 CGCCAAGCGGCACCGGAAAGTCCTCCGGGATAACATCCAGGGCATCACGAAGCCCGCCAT 9143714 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || ||||| |||||||| | ||||| | |||| || |||| Sbjct 9143715 CCGCCGGCTCGCCCGCCGAGGTGGTGTCAAGCGCATTTCTGGGCTCATCTACGAGGAGAC 9143774 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| || | || || | |||||||| Sbjct 9143775 CCGGGGAGTCCTGAAGGTCTTCCTGGAGAACGTGATTCGCGACGCGGTGACTTATACCGA 9143834 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| | ||||| | || || || ||||||| || || Sbjct 9143835 GCACGCCAAGCGCAAGACGGTCACCGCTATGGACGTGGTGTACGCGCTGAAACGCCAGGG 9143894 Query 16672 CCG 16674 ||| Sbjct 9143895 CCG 9143897 >seq287 Length=1644148 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 780055 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 779996 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 779995 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 779936 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 779935 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 779876 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | ||||| || | || || || || Sbjct 779875 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 779816 Query 16672 CCG 16674 ||| Sbjct 779815 CCG 779813 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 607233 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 607292 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 607293 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 607352 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 607353 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 607412 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 607413 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 607472 Query 16672 CCG 16674 ||| Sbjct 607473 CCG 607475 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 654304 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 654245 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 654244 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 654185 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 654184 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 654125 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 654124 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 654065 Query 16672 CCG 16674 ||| Sbjct 654064 CCG 654062 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 628116 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 628175 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || || || |||||||| |||| || | |||| || |||| Sbjct 628176 CCGGCGGCTGGCCCCGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 628235 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 628236 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 628295 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 628296 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 628355 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 628356 CCGCACCCTCTACGGCTTTGG 628376 >seq400 Length=547227 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 355577 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 355636 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || | |||||| |||| || | |||| || |||| Sbjct 355637 CCGGCGGCTGGCCCGGCGCGGCGGCGGCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 355696 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 355697 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 355756 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 355757 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 355816 Query 16672 CCG 16674 ||| Sbjct 355817 CCG 355819 >seq237 Length=2526385 Score = 118 bits (130), Expect = 2e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || || ||||| || || || || || || || || ||||| || ||| Sbjct 2246066 GACAACATCCAGGGTATTACCAAACCGGCGATTCGGCGCCTTGCCCGGCGTGGAGGCGTC 2246007 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | |||| || |||| ||| | ||| ||||| | ||| | || Sbjct 2246006 AAGCGGATCTCCGGCCTCCTCTACGAGGAGACTCGGGGTGTGCTGAAGGTGTTCTTGGAG 2245947 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||||||||||||||| || || ||||| ||||| || Sbjct 2245946 AACGTCATCCGGGACGCAGTCACCTATACCGAGCACGCCAAGCGCAAGACGGTCACTGCC 2245887 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||| | || || || || || | ||||| ||||| Sbjct 2245886 ATGGACGTGGTGTATGCTCTCAAGCGACAGGGGCGCGCCCTGTATGGCTTTGG 2245834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068083948619