Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq141 89.7 5e-13 seq17 84.2 2e-11 >seq141 Length=6018405 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| || |||||| ||| || ||| | | | | Sbjct 2352758 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATGACTGCAAAAC 2352699 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || |||| ||| || || |||||||| || |||||||| || || || Sbjct 2352698 GTTGATACTCTGCCACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTT 2352639 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 2352638 CCATAAAATCAAAGGGATTTTC 2352617 >seq17 Length=19722643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | | ||||| | |||||| | Sbjct 6751029 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 6750970 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 6750969 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 6750910 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 6750909 CATAAAGTCAAATGGATTTTC 6750889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531849052700920