Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq65 116 3e-21 seq50 98.7 9e-16 seq161 82.4 7e-11 >seq65 Length=10028950 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 4317956 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4318015 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| | || ||| ||||||||||| || || |||||||| Sbjct 4318016 GACACCATTGAAAATGTAAAGGACAAGATCCAAGACAAAGAAGGCATCCCCCCTGACCAG 4318075 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| ||||| || | ||||||| |||||| | |||||||| Sbjct 4318076 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCTGATTACAAC 4318135 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || ||| | || || Sbjct 4318136 ATCCAGAAAGAGTCCACCCTGCATCTGGTCCT 4318167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 25096 AAGAAGGG-ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||| |||| || || |||||||| ||| || |||| ||||| ||||| || | |||||| Sbjct 4317824 AAGGAGGGCATCCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGAT 4317883 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 | || ||| | |||||||| || || ||||||||||| || ||| | || || || Sbjct 4317884 GGCCGTACTCTTTCTGATTACAACATCCAGAAAGAATCCACTCTGCATCTGGTCCTTCGG 4317943 Query 25215 CTAAGAGGAGG 25225 || ||||| || Sbjct 4317944 CTGAGAGGTGG 4317954 >seq50 Length=12588045 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || ||||||| | | |||||| | Sbjct 11770857 AATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGAAGGTGGAGCCCAA 11770798 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || ||||| || || || | || || Sbjct 11770797 TGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCACGATCA 11770738 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||||||||| || | ||||||| | |||| | |||||||| Sbjct 11770737 GCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGATTACAA 11770678 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| ||||| || || Sbjct 11770677 CATCCAGAAAGAGTCCACCCTGCA 11770654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 11770400 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 11770341 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || ||||| || || || | |||||| Sbjct 11770340 GACACCATTGAAAATGTAAAGGCCAAGATCCAAGATAAAGAGGGCATCCC-CGTGACCAG 11770282 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||||||||| || ||||||||| ||||| | |||||||| Sbjct 11770281 CAGAGGCTTATCTTTGCCGGCAAGCAGCTAGAAGATGGCTGCACTCTTTCTGATTACAAC 11770222 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 11770221 ATCCAGAAAGAGTCAACTCTCCA 11770199 >seq161 Length=5000004 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || ||||| |||| || || ||||||| | || |||||| | |||| Sbjct 410121 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGAC 410180 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || || || | ||| || ||| || ||||| || || || | |||||| ||| Sbjct 410181 ACCATTGAAAATGTAAAGGCCAAGATCCAAGATAAAGAGGGCATCCC-CGTGACCAGCAG 410239 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || |||| ||||||||||| || ||||||||| ||||| | |||||||| || Sbjct 410240 AGGCTTATCTTTGCCGGCAAGCAGCTAGAAGATGGCTGCACTCTTTCTGATTACAACATC 410299 Query 25182 CAAAAAGAATCCACGCTACA 25201 || ||||| || || || || Sbjct 410300 CAGAAAGAGTCAACTCTCCA 410319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286896537145