Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq323 105 7e-18 seq161 100 3e-16 seq101 95.1 1e-14 seq30 95.1 1e-14 seq400 91.5 2e-13 seq39 91.5 2e-13 seq24 91.5 2e-13 seq76 89.7 6e-13 seq65 89.7 6e-13 seq2 86.0 7e-12 seq10 82.4 8e-11 >seq323 Length=1159590 Score = 105 bits (116), Expect = 7e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||| ||| || || || |||||||||| ||||| || | Sbjct 303405 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 303464 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || | ||||||||||| || | || |||||| Sbjct 303465 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTA 303524 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || || | || | | ||||| || | ||||| || | |||||| Sbjct 303525 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 303584 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || ||||| || || ||||| || || || |||||||| || Sbjct 303585 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGAC 303625 >seq161 Length=5000004 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||| ||||| || | || ||||||||||| ||||| || Sbjct 410081 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAA 410022 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||| || ||| || ||| | | Sbjct 410021 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCTTTCACATT 409962 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 409961 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 409902 Query 42197 AAAGATTTGCATTTTCAC 42214 || || |||||||| || Sbjct 409901 GAAAATCTGCATTTTGAC 409884 >seq101 Length=7325712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||| ||| || || || |||||||||| ||||| || | Sbjct 127809 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 127868 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || | ||||||||||| || | || ||| ||| Sbjct 127869 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTG 127928 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || || | | | | | ||||| || ||||| || | |||||| Sbjct 127929 TCTTGGATCTTGGCCTTCA-CAT--TCTCGGTGTCACTGAGCTCCACCTCCAGGGTGATG 127985 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || ||||| || || ||||| || || || |||||||| || Sbjct 127986 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGAC 128026 >seq30 Length=15425804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 12938 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 12879 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 12878 CTATACTAACGAGGA 12864 >seq400 Length=547227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| | ||||||||||||||||||| |||||||||| Sbjct 463730 TTTCTCCCCGTCGGGGAATCGAACCCCGATCTCCCGCGTGACAGGCGGGGATACTCACCA 463671 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 463670 CTATACTAACGAGGA 463656 >seq39 Length=13401118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1501262 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1501203 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1501202 TACTAACGAGGAT 1501190 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1503579 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1503520 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1503519 TACTAACGAGGA 1503508 >seq24 Length=16157387 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 5447953 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 5448012 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 5448013 ATACTAACGAGGA 5448025 >seq76 Length=8897836 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 6128700 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6128641 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 6128640 TACTAACGAGGA 6128629 >seq65 Length=10028950 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||| ||||| || | || ||||||||||| || || || Sbjct 4318375 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCCTGCAAA 4318316 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||| || ||| || || | | Sbjct 4318315 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTTTACATT 4318256 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 4318255 TTCAATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4318196 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 4318195 GAAGATCTGCAT 4318184 >seq2 Length=40953715 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| || | || Sbjct 19232385 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 19232444 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || ||||| ||||| || || |||| |||||| || | || | | |||||||| Sbjct 19232445 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC 19232504 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| | |||| || | | | | || || | ||| || |||| || |||| Sbjct 19232505 C-TGAATCTTTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGG 19232563 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || || ||||| Sbjct 19232564 TCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq10 Length=27182759 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 68731 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 68672 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 68671 ATACTAACGAGGA 68659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543159952184720