Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq65 89.7 5e-13 seq39 84.2 2e-11 >seq2 Length=40953715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 19232404 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 19232463 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| || || ||||| || ||||| ||||| ||| | |||| || | Sbjct 19232464 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC-CTGAATCTTTGCCTTCAC 19232522 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | || ||||||| || | || || || || || ||||| Sbjct 19232523 ATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTT 19232582 Query 138600 TACAAAAATCTGCAT 138614 ||| ||||||||||| Sbjct 19232583 TACGAAAATCTGCAT 19232597 >seq65 Length=10028950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | ||||| || || |||||||| || Sbjct 4318183 GCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 4318124 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || ||||| || || || | | |||| || | ||| ||||| || || Sbjct 4318123 AAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 4318064 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || | |||| | ||| | |||||| | | |||||| Sbjct 4318063 GATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCAC 4318004 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || ||||| || || || || ||||||||| Sbjct 4318003 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 4317955 >seq39 Length=13401118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || ||| ||||| || ||||| || | | Sbjct 1513477 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCAGCA 1513418 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || || || || ||||| ||| || || | Sbjct 1513417 AAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 1513358 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || ||||| ||||| || || Sbjct 1513357 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTC 1513298 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1513297 ACGAAGATCTGCAT 1513284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496214119871760