Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 105 8e-18 seq133 102 9e-17 seq2363 86.0 7e-12 >seq17 Length=19722643 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | ||| |||||||| Sbjct 6751029 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 6750972 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 6750971 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 6750912 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 6750911 TCCATAAAGTCAAATGGATTTTCTAC 6750886 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 6749546 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6749487 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || || || | Sbjct 6749486 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 6749427 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 6749426 CCACAACCCGTTCTCC 6749411 >seq133 Length=6340249 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 5017076 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATGGAC 5017017 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 5017016 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 5016957 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 5016956 TTTCTTATACCATA 5016943 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| || |||| || | || || || | Sbjct 5019321 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCGATGTGGATGT 5019262 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||||||||||| | || ||| Sbjct 5019261 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 5019205 Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 5019204 TTTTCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 5019153 >seq2363 Length=2743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| |||| || | | ||| Sbjct 2311 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTA 2252 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || ||| || || | ||| || | ||| ||| Sbjct 2251 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGACACCCTCATCAAC 2192 Query 48720 ATATATTGAGGTCTTTC 48736 |||| ||| |||||||| Sbjct 2191 ATATGTTGTGGTCTTTC 2175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054113840120