Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq63 237 1e-57 seq9 136 3e-27 seq70 91.5 1e-13 >seq63 Length=10485012 Score = 237 bits (262), Expect = 1e-57 Identities = 362/513 (71%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| || || || || ||||| | |||||| | || | ||||| |||||| Sbjct 8862408 GGGAAAGGC-CTTGGTTCTTGCTGAAGCTGCATTTTCAGCAGCTCAATGTGATTCAGGTA 8862466 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 | || || ||||||| || || || || || || || | ||| || |||| ||| || Sbjct 8862467 AATATGTGCATCTCCCAAAGTATGTACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGC 8862526 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||| ||||| || | |||||||||||||| ||||| || || || |||||||| Sbjct 8862527 AATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 8862586 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 ||| ||||||||||| ||||| || || || || || | |||| ||||||| || | Sbjct 8862587 CCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACCACGCAAAACTGGCAGAG 8862646 Query 30006 GGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065 || ||||||||||| || ||| | || | ||||| || |||||| | | || ||| Sbjct 8862647 GGCATGGCACGGAGGGAGGGCCGTCAGAGGAATATCTTTTGGATTCCAGCCACTCAGGAT 8862706 Query 30066 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125 ||| | ||||| | |||||| | |||| ||| | | | |||||||| || || || Sbjct 8862707 GATTCTTCTGTCGTTGGGGTTGGT-TTGATTGTGTCAATGACCTTTTGCAGTTGGTCTAC 8862765 Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185 || || || || |||| | | || |||| ||||| || |||||| ||||||| Sbjct 8862766 TCCTTGACCTGAATAATCTGAATCCTTATCTATGTATTCTGCCCCAAAATGCTTCCACTG 8862825 Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245 || | || || || || | || || |||| |||| ||| ||| ||||| | Sbjct 8862826 AAAGACATAAACTGGGCCTAAATCCCCTTCTTTTCTGTTGGAGAACCCCAAGCTGTCCTA 8862885 Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 ||||||| || || ||||| |||||||| || Sbjct 8862886 GAAGTCTCGAGACCCATTGGCATCCCAGATTTT 8862918 >seq9 Length=27295742 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 15743172 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGG 15743231 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| ||||| ||||||||||| ||||| || || ||||| || | Sbjct 15743232 CACGCCCAGGCCCATATCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC 15743291 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 |||||| ||||| || | || ||||||||||| || ||||| || Sbjct 15743292 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATCAG 15743336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 15745768 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 15745827 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | |||| ||| ||| ||||||| ||||||| || || ||||| |||||||| | Sbjct 15745828 CTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTT 15745887 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || || || | |||||| || || Sbjct 15745888 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTTGTAGATCC 15745927 >seq70 Length=9335154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| |||| || || || || | | ||||| |||||| || || Sbjct 9239470 TTGAGGTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 9239411 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 || |||||||| |||||||||||||| ||||||| |||||| || ||| Sbjct 9239410 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAGTTCTGTTTACCT 9239363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408578840449859