Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq101 98.7 8e-16 seq323 96.9 3e-15 seq65 96.9 3e-15 seq161 87.8 1e-12 >seq2 Length=40953715 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 19232385 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 19232444 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || |||||||| Sbjct 19232445 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC 19232504 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||||| || ||| | | | || || | || ||||| | ||||| || Sbjct 19232505 CTGAATCTTTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGGT 19232564 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | |||||||| |||||||||||| || Sbjct 19232565 CTTCCCCGTAAGGGTTTTTACGAAAATCTGCATCCTG 19232601 >seq101 Length=7325712 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| || || ||| |||||| || || ||||||||||| Sbjct 127796 GCCACCCCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 127855 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 127856 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGG 127915 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| ||||| || ||| | | | | |||| |||||| Sbjct 127916 GATGCCCTCTTTGTCTTGGATCTTGGCCTTCACA-TTCTCGGTGTCACTGA--GCTCCAC 127972 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || ||||||||||| Sbjct 127973 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 128020 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || |||| | |||| ||| || ||| || || || || ||||||||||| Sbjct 127568 GCCACCTCTCAGCCAAAGGACCAGATGCAGAGTGGATTCGTTCTGGATGTTGTAATCAGA 127627 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 127628 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 127687 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| ||| ||| | | | || | |||||| Sbjct 127688 GATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCACTAGGCTCCAC 127747 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 127748 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 127795 >seq323 Length=1159590 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| || || ||| |||||| || || ||||||||||| Sbjct 303392 GCCACCCCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 303451 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 303452 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGG 303511 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | || | |||||| Sbjct 303512 GATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 303571 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || ||||||||||| Sbjct 303572 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 303619 >seq65 Length=10028950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| |||||| || || ||||||||||| Sbjct 4318183 GCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 4318124 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || || | |||||| || ||||| || || | ||| || || | ||| Sbjct 4318123 AAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 4318064 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| || ||||| ||||| | |||||| | | | || | |||||| Sbjct 4318063 GATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCAC 4318004 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 4318003 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || ||||| | |||| ||| || ||| ||||| || || ||||||||||| Sbjct 4317955 GCCACCTCTCAGCCGAAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 4317896 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 4317895 AAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 4317836 Query 48659 AACGCCCTCCTTGTC 48673 | ||||||||| || Sbjct 4317835 GATGCCCTCCTTATC 4317821 >seq161 Length=5000004 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || || |||||| || || ||||||||||| Sbjct 410117 GCCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 410058 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || || | |||||| || ||||| || || | ||| || || | ||| Sbjct 410057 AAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 409998 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| ||| ||| | | | || | |||||| Sbjct 409997 GATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCAC 409938 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || ||||||||||| Sbjct 409937 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 409890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380901466044909