Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 127 4e-24 seq32 93.3 8e-14 seq65 86.0 1e-11 >seq2 Length=40953715 Score = 127 bits (140), Expect = 4e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 19232370 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 19232428 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 19232429 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 19232488 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || || ||||| ||| | ||| || | ||| | Sbjct 19232489 GAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAA 19232548 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||||||||| || || || | ||||| | || |||||||| Sbjct 19232549 CCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq32 Length=14820502 Score = 93.3 bits (102), Expect = 8e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 || ||||| | || || ||| ||| ||| ||| ||| ||| | || || |||| || Sbjct 8777008 ACAAAATGAAGAGCAGACTCCTTTTGAGC-ATTGTAACCAGGCAGAGTATGTCCATCTTC 8777066 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||| | || ||||||||||| |||||| |||||||| || |||||||| ||||| || Sbjct 8777067 CAATAGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 8777126 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || || |||| ||| | |||| | | ||| || | ||||| ||||| || Sbjct 8777127 AATCTTGGCCTTCACATCTTCTATTGTATCTAAGGGTTCAACCTTGAGAGTGATGGTCTT 8777186 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||||| | || |||||| Sbjct 8777187 CCCTGTAAGGGTTTTCACGAAAATCTGC 8777214 >seq65 Length=10028950 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || | ||| | || | |||||| ||| || |||||| Sbjct 4318185 ATGCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCA 4318126 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 4318125 GAAAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGG 4318066 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || | |||||||| || | || | || Sbjct 4318065 GGGATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCC 4318006 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | || || | || |||||||| Sbjct 4318005 ACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984381827962050