Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 125 1e-23 seq140 91.5 3e-13 >seq2 Length=40953715 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 19232361 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 19232420 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | |||||| || Sbjct 19232421 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTG 19232480 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| || || || || || || ||||| ||| ||||| || Sbjct 19232481 ATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACATTTTCTATTGTATCCGA 19232540 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || ||||||||||| || || || | ||||| | ||| |||||||| Sbjct 19232541 GGGTTCAACCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 19232597 >seq140 Length=6017924 Score = 91.5 bits (100), Expect = 3e-13 Identities = 176/255 (69%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 171821 TATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC 171880 ||| |||| | |||| ||| |||||| | ||||| || || | ||| | ||| | || Sbjct 3756365 TATTCTTTCT--TTTCTTAACACCACC-CAAAGTCTCAACACAAGATGAAGAGTGGACT- 3756420 Query 171881 TTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAAT 171940 ||||| |||| | || | |||| | | | || ||| ||| || |||||| | Sbjct 3756421 -TTAGA--TATTGCAGTCATACAAAGTACATGCATCTTCCCCTTGCTT----GCAAAACT 3756473 Query 171941 TAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT 172000 | |||||| | ||| | || || ||||| ||| | || | || |||||||||| | Sbjct 3756474 CAGTCTCTGCTTATCAAGAGGAATACCTTCCTTACCCTGGCTCTTGGTTTTTACATTTTT 3756533 Query 172001 TATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 ||||||||||| | ||| || || ||||||||| | || || ||| ||||| | || Sbjct 3756534 TATAGTATCTGGAGGTTCAACCTCAAGAGTAATGATCTTCCCCATTAGGGTTTTCACAAA 3756593 Query 172061 TATCTGCATTTTATT 172075 |||||||| || || Sbjct 3756594 AATCTGCATCTTGTT 3756608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905047941581400