Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq50 82.4 6e-11 seq2 82.4 6e-11 >seq50 Length=12588045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 ||| |||| |||||||| ||||| || || || | || ||||| ||||| ||| | | Sbjct 11770868 TAACAGGTC-AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGAA 11770810 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 |||| | || || ||| | || || ||||| |||||||| ||| | Sbjct 11770809 GGTGGAGCCCAATGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 11770750 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 ||| ||||||||||| ||||| | ||| || || |||||||| || | | | || | Sbjct 11770749 CCCCCACGATCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACACTCT 11770690 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 | || |||||||| || || ||||| || ||||| |||| Sbjct 11770689 TTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 11770648 >seq2 Length=40953715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||| | || || || |||||||| |||| || | Sbjct 19232597 ATGCAGATTTTCGTAAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCG 19232538 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||||| || || ||||| | || |||||| Sbjct 19232537 GATACAATAGAAAATGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG 19232478 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || || ||||| || | || || | ||||||||| Sbjct 19232477 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 19232418 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||| || | || | ||||||||| | || || || ||| |||| Sbjct 19232417 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAA 19232360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398838964416487