Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq39 125 6e-24 >seq39 Length=13401118 Score = 125 bits (138), Expect = 6e-24 Identities = 466/713 (65%), Gaps = 78/713 (11%) Strand=Plus/Minus Query 1079 CTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCATTTTAAAG 1138 |||||||| |||||||||| ||| ||| |||| || | | | |||||||||||||||| Sbjct 3576022 CTAGCTTCGGGTCTGAAAA-GAGGAGGGTTCTTCTGGGGGCAACGGAAGGCATTTTAAAG 3575964 Query 1139 AAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT---TTTGAA 1195 ||| ||| ||| || || |||| || |||| ||||| ||||||| |||| ||||| Sbjct 3575963 AAATGGCCCAGAGAAGAATTCTGTAGGACACTCACATAGTCTTCCAAAAGTCCCTTTGAC 3575904 Query 1196 AATGAGAACTGTAGTTCTGTGATTAC-AGCTGATT----GTATGTCCCGTGGTAGTGGAT 1250 | ||| |||| ||| | || ||||| | | || |||||| || | | Sbjct 3575903 A-----------AGTGCTGTAATTCCAAGATGATTTTCCGAACATCGCGTGGTTGTAGCT 3575855 Query 1251 ----GGC--------CGTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGG 1298 ||| | ||||||| ||| | | | | ||||||||||||||||||| Sbjct 3575854 GTTGGGCGGGCGCTGCATGGGAGGTCAGCGAAGTTTCCATGCAGCAGAGCAGGAACAGGG 3575795 Query 1299 CAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACAC-CCCCACCTGCCCCATA 1357 | || | | | || | ||| ||| | ||||| | || | | ||| | | Sbjct 3575794 TGAACCTGGCTGGTCCTGGAGAAAGAGAATGATGCCGTGAGACACAGGATCTGACAC-GG 3575736 Query 1358 CCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCCATCC--AGTC 1415 ||| || |||| |||| |||||||| | | ||||||| | ||| |||| Sbjct 3575735 CCT--GCCCGCCCCAGCTGCCACCACCG---------CTGGCTGAGCCTC-TCCAGAGTC 3575688 Query 1416 TTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTAT 1475 || | || | ||| ||| || ||| |||| ||| || ||| | |||||| Sbjct 3575687 TTCCCCTCTTTCTGAGGAGACAAAGCCGTGCCCA-CAG-AT--GGGGCAGCAGGACCCGG 3575632 Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAG-GCCGCC-GCTTTGGCAACAGC 1533 | ||||||| | |||| | || || |||||||| | || ||| || | |||| |||| Sbjct 3575631 CAATACCTGTGTGGGAGAGCATGGCGAGAGAGAGCACGCGCAGCCTGCCTCGGCAGCAGC 3575572 Query 1534 TGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTA 1593 || ||| |||||||||||| || | | ||| |||||||||||| | | Sbjct 3575571 --CTCCAGTCAGATGTGCTCGCCATGGTCCTCAGGA--GATATATAAAGGGCCGCTCACA 3575516 Query 1594 AGGAGG--AGCAC--TAAAAGTACCGCCCACGG-TAAAGTCATTACT-----------CA 1637 || || ||||| | || || ||||||| || ||| ||||| || || Sbjct 3575515 GGGGGGGAAGCACAATCAACGTCCCGCCCATGGCAAAAATCATTGCTCAGTTTTTCTCCA 3575456 Query 1638 GAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA---A 1694 ||||||| ||||| || ||| | | |||| | ||| || ||| ||||||| Sbjct 3575455 GAAAACA-CTCAAAATTCTGCGGCCCAAGGTTGGGTGAAATCAGTGCTAGAAGGAAGCGC 3575397 Query 1695 TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 ||| |||||||| ||| ||||||||||| |||| || | || | |||||| || Sbjct 3575396 TGAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACACACACACACAGG 3575344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || ||||||||||||| ||||||||||| ||||||||||||||||||| | || Sbjct 3578018 CACAAAATCCAAAACAGGTTATGAGAAAAATTCAATATAATTTATTAAATAATTCCCGAG 3577959 Query 231 GGCTTCTTTAAGAAGCATTAACAA 254 || | ||| ||| | ||||||||| Sbjct 3577958 GGTTCCTTCAAGGAACATTAACAA 3577935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438517333594000