Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq171 293 3e-74 seq81 188 8e-43 seq129 141 1e-28 >seq171 Length=4644964 Score = 293 bits (324), Expect = 3e-74 Identities = 629/934 (67%), Gaps = 21/934 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || ||||| | || | ||| || | |||||||| || || | ||| ||| Sbjct 1298526 CCAAGGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATGGCAAAGAGGTCAACGTCCG 1298467 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| || |||| ||| ||| || | ||||| || | || || | Sbjct 1298466 TGTCGAACTTGTTGGCAAACAAGTGGTGC---TTGCGGAGCATCCAGTTCAAGTCACCTG 1298410 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||||| |||||||| ||||| ||||| || || || |||| || | Sbjct 1298409 CCCCGAACACGCACACGGAACGCACGTGGACGCCACTGCAGGGTGGGTAGGGGGCACCCT 1298350 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| |||||| |||| |||||||| || ||||| | || || |||||||| | Sbjct 1298349 TGGAAACATCACCCTCGAAGTACTGCCACTTGACAAACCTCGCAATCGCGTGCATGTCAG 1298290 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | | || || || || ||| | || | ||||| | | Sbjct 1298289 ACATGTCGTACTTCTGGCTTAAGGACAGGGAGCCTGGGACATCTGGGATCCTCTGAATGG 1298230 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| || Sbjct 1298229 TGGCCCAGAGATACTCATCGGGGCTGTAGGTGTCTTTTGCCCACTCCATAAACTTTTGGA 1298170 Query 162419 CCGTTTTATCGTA---TAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 |||| |||| ||| | || ||||| ||| | || | ||| || || | Sbjct 1298169 ---TTTTTTCGTTCTCTAGCACATACTCCACGTACTTCCTACTGACCACAAAATAGGCAC 1298113 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTC---TTTGTCTTGACCCGTGTTGA 162532 | || || |||| ||| | | | ||||||||| |||||| || ||||| Sbjct 1298112 TGCCTGAGAACAGGGGAGT---TTCAAGAGGGGGCTGCATTTTGTCGGTCCCTGTGTTCG 1298056 Query 162533 CTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592 | | |||| | || ||| | ||| ||||||| | | || ||| | | Sbjct 1298055 TCAGCTTTCCGTTAACAACCGTATAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCA 1297996 Query 162593 GGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 ||||| ||||| |||| |||| | | ||| |||| || || || || | Sbjct 1297995 TCCTCTCGGTTTCTAGGTTGTTTTCACCCATTAGTGACTTGAGCTTCCGGACAATTTCCA 1297936 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 1297935 AGTTGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCCC 1297876 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | | | ||| || ||||| | ||||| || |||||||| || || |||||||| |||| Sbjct 1297875 TCATCCTGTAGAGGTCCTGCATGCAGTTGAGGTCGGCCTGAACCCGGCTCCACGAGGCGT 1297816 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 |||| || ||||||| | | |||| || |||||||| ||| || || | || |||| Sbjct 1297815 ACACCACACTCTCCAGCTGACTGGCCACGAAGACATTACTGAAGCAGGACGCGATGCCCA 1297756 Query 162833 TCA---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 || |||||| || | ||| || | ||| || || ||||| | |||||| | || Sbjct 1297755 GCACCGCGGCCAAGAAGGA-ATC--CTCTGATTTTCTGTCCACGTGAATGCAGTAGAAAT 1297699 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||| || ||||||||||||||||| | || || | ||| || || || || || |||| Sbjct 1297698 TCTGGGGCGCGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGGACCA 1297639 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | |||||||| || ||||| || || ||||| || Sbjct 1297638 CTATAGAATATGCGATGGGAAATTCTGCCTCTTC 1297605 >seq81 Length=8639600 Score = 188 bits (208), Expect = 8e-43 Identities = 218/294 (74%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||||||||| || | | Sbjct 6611946 CAGAGAGGGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 6612005 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||| ||||| || || | || || || ||| Sbjct 6612006 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTGATGGTTGAGTTCTTGA 6612065 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || | || ||||| | | |||||| || | |||||||| ||||| || || | Sbjct 6612066 GTTCCAGCTCAGTGATGTTTATCTTGTCCTTATAGGCGGGCTGGACCACAACCCCATGGT 6612125 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| || ||| || |||||||| || || | Sbjct 6612126 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACAGGCTTGATTTTCTGCCATGTCACAA 6612185 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | || ||||| | |||| |||||||||||||| |||||||||||||||| Sbjct 6612186 TCAAGACTTCCTCAGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCA 6612239 Score = 109 bits (120), Expect = 6e-19 Identities = 176/251 (70%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| ||| | || || |||||| ||| | || | ||| | |||||||| Sbjct 6609262 ACAGTTTGCGTGACGCTGGTCACGTTCCCCAGGTGAAGCACCTGGCAGACCACCTCCT-- 6609319 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || ||||| | ||| || |||||||| ||||| Sbjct 6609320 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGAAGGACGCTCGTGACAGATGTGGTCCCA 6609378 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | || ||||| | |||||| || || || || || || | || ||||| Sbjct 6609379 TTGGGGTGGGAGAGAACC---TCAGTACTGTTGTCAATCCCTGACCCAGACACCTTCCAG 6609435 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||||||||||| || || | ||||||||| Sbjct 6609436 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTCAGGTGGTCTTCGAAG 6609495 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 6609496 AATTTATAGTG 6609506 >seq129 Length=6421872 Score = 141 bits (156), Expect = 1e-28 Identities = 396/594 (67%), Gaps = 19/594 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || || | | || Sbjct 700686 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 700627 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 700626 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 700567 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || |||| || || || | ||||| | || || | || || Sbjct 700566 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCTAAAAAAGCAT 700507 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | |||||||||| Sbjct 700506 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAGAATT 700447 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 700446 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 700389 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || ||| Sbjct 700388 CCCATACGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCGT 700330 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 700329 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 700275 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | || || ||||| || ||||| | Sbjct 700274 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 700216 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 ||||||| | ||| || | || | ||||| |||| || || | ||| |||| ||| Sbjct 700215 AGTCGCGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGCTCAATGCCACTTTTTTG--GGG 700158 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || Sbjct 700157 CGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 700104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578375725796800