Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq125 89.7 3e-13 seq65 89.7 3e-13 seq39 86.0 4e-12 seq101 84.2 1e-11 >seq125 Length=6462000 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || |||| ||| || || | ||| | || |||| ||||| || |||| Sbjct 2357464 CTCTTTCTGGATATTGTGATCTGACAGAGCGCGGCCATCTTCCAGCTGTTTGCCCACAAA 2357523 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| || ||||||||| | || | || || ||||| | ||||| ||| | ||| Sbjct 2357524 AATCAGACACTGCTGATCAGGGGGGATGCCCTCCTTGTCTTCGATTTTGGCTTTGA-CAT 2357582 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| ||||||||| | || || |||| ||||| || || ||||| | || || | Sbjct 2357583 TCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCA 2357642 Query 33737 CAAAGATCTGCAT 33749 ||||||||||| Sbjct 2357643 TGAAGATCTGCAT 2357655 >seq65 Length=10028950 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| ||| || ||| |||||| || ||||||||||| || Sbjct 4318182 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 4318123 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || || ||||| || | | |||||| || | || Sbjct 4318122 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 4318063 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || |||| || | |||||| || | ||||| Sbjct 4318062 ATGCCTTCTTTGTCTTGGATCTTGTCCTT-TACATTTTCAATGGTGTCACTGGGCTCCAC 4318004 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 4318003 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4317956 >seq39 Length=13401118 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || ||||| ||| || || |||||||| ||||| Sbjct 1513510 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1513451 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 1513450 AGGGTGCGCCCATCCTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1513391 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1513390 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1513332 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || | || || || ||||||||||| || Sbjct 1513331 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCATTGT 1513281 >seq101 Length=7325712 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| || |||||| |||||| || ||||||||||| || Sbjct 127797 CCACCCCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 127856 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 127857 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGGG 127916 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | || |||||||| || || ||| |||| || ||||||| || ||||| Sbjct 127917 ATGCCCTCTTTGTCTTGGATCTTGGCCTTC-ACAT--TCTCGGTGTCACTGAGCTCCACC 127973 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || || |||||||| Sbjct 127974 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 128020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328672820679360