Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 seq237 91.5 1e-13 seq133 91.5 1e-13 seq65 86.0 6e-12 >seq2 Length=40953715 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 19232404 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 19232463 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| || || ||| ||| |||| Sbjct 19232464 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACA 19232523 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || |||||| Sbjct 19232524 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTT 19232583 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 19232584 ACGAAAATCTGCAT 19232597 >seq237 Length=2526385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | ||||| || || |||||||||||| || ||| || Sbjct 2103807 CAAGCGCAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 2103866 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||| || |||||||| |||| | |||| | | ||| || || || || ||||| || Sbjct 2103867 CCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTC 2103926 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||| || ||||| | || | || || | |||||||| || | || Sbjct 2103927 TTTCTCTTGAATCTTCCCTTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 2103986 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAA 132114 | || ||||| ||||| || || | ||| Sbjct 2103987 GATGGTCTTACCCGTCAGGGTCTTCACGAA 2104016 >seq133 Length=6340249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||| ||| Sbjct 5009179 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTG 5009120 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | ||||||| | ||||||||||| Sbjct 5009119 CTCTTCCGATTACAGGAGTCTTTGTAAAGCATGTACGG 5009082 >seq65 Length=10028950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| ||| | | | |||||||| || |||||||| || | || || Sbjct 4318174 CAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCG 4318115 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 4318114 GCCATCTTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCTTC 4318055 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || | || | | ||| | || || | |||||||| || | || Sbjct 4318054 TTTGTCTTGGATCTTGTCCTTTACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGT 4317995 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 4317994 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 4317955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476564831687880