Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq323 105 6e-18 seq161 102 7e-17 seq101 102 7e-17 seq65 98.7 9e-16 seq50 86.0 6e-12 >seq2 Length=40953715 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 19232371 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 19232430 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||| || | |||| Sbjct 19232431 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 19232490 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||||| | || | | || || | ||| ||| Sbjct 19232491 ATTCCTTCCTTGTCCTGAATCTTTGCCTTCACATTTTCTATTGTATCCGAGGGTTCAACC 19232550 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | || || || || ||||| | ||||| || || |||||||| ||| Sbjct 19232551 TCGAGAGTAATGGTCTTCCCCGTAAGGGTTTTTACGAAAATCTGCATCCTG 19232601 >seq323 Length=1159590 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 303428 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 303487 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| || |||||| ||||| | | Sbjct 303488 GATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACATT 303547 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 303548 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 303607 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 303608 GAAAATCTGCATTTTG 303623 >seq161 Length=5000004 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || || |||||||| || ||||| Sbjct 410081 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAA 410022 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| || |||||| |||| | | Sbjct 410021 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCTTTCACATT 409962 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 409961 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 409902 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 409901 GAAAATCTGCATTTTG 409886 >seq101 Length=7325712 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 127605 TCGTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 127664 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | || | || |||||| || |||||| |||| | || Sbjct 127665 ATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTT 127724 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 127725 TCAATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACG 127784 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 127785 AAGATCTGCAT 127795 Score = 100 bits (110), Expect = 3e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 127832 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 127891 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||| ||||| |||||| ||||| | | Sbjct 127892 GATAAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATT 127951 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||||| ||||| || || || |||| || ||||| Sbjct 127952 ---CTCGGTGTCACTGAGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 128008 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 128009 GAAAATCTGCATTTTG 128024 >seq65 Length=10028950 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || || |||||||| || ||||| Sbjct 4318147 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAA 4318088 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || ||||| |||||| | ||| | | | Sbjct 4318087 GATAAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTGTCCTTTACATT 4318028 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 4318027 TTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCAC 4317968 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4317967 GAAGATCTGCAT 4317956 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || || |||||||| || ||||| Sbjct 4318375 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCCTGCAAA 4318316 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| || |||||| ||| | | | Sbjct 4318315 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTTTACATT 4318256 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 4318255 TTCAATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4318196 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4318195 GAAGATCTGCAT 4318184 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| || | || ||||||||| | || | || ||| ||| Sbjct 4317675 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4317616 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || |||||| ||||| | | | | ||||| || | |||||||||| ||||| Sbjct 4317615 TCTTGGATCTTGGCCTTCACATTATCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4317556 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || | |||| || ||||| || |||||||||||| Sbjct 4317555 GTCTTGCAGGTCAGGGTCTTCACGAAAATCTGCATTCTG 4317517 >seq50 Length=12588045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | | || || |||||||| || ||||| Sbjct 11770210 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCTAGCTGCTTGCCGGCAAA 11770269 Query 35605 TATCAACCGCTGCTGGTC-CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 || | || ||||||||| || || | || ||| || || |||||| ||| | | Sbjct 11770270 GATAAGCCTCTGCTGGTCACG--GGGATGCCCTCTTTATCTTGGATCTTGGCCTTTACAT 11770327 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || | |||||||||| ||||| || || || |||| || |||| Sbjct 11770328 TTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCA 11770387 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 11770388 CGAAGATCTGCAT 11770400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450749743417640