Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq63 176 4e-39 seq17 109 4e-19 seq141 91.5 1e-13 >seq63 Length=10485012 Score = 176 bits (194), Expect = 4e-39 Identities = 285/409 (70%), Gaps = 1/409 (0%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||| ||| | || || ||||||| ||||||| | |||||||| ||| |||| Sbjct 8862855 GAAGGGGATTTAGGCCCAGTTTATGTCTTTCAGTGGAAGCATTTTGGGGCAGAATACATA 8862796 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 || | | || |||||| | | ||||| | || ||| | || || || || || Sbjct 8862795 GATAAGGATTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTCATTGACACA 8862736 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| || | ||| | | || | || || || | | ||||| |||| || | Sbjct 8862735 ATCAAA-CCAACCCCAACGACAGAAGAATCATCCTGAGTGGCTGGAATCCAAAAGATATT 8862677 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | ||| ||| | || || || ||| | || ||||||| ||| ||||||||| Sbjct 8862676 CCTCTGACGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTTTGCGTGGTGAATGGTGAA 8862617 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 ||||| || || |||| || || ||||| |||||||| || || || || || ||||| Sbjct 8862616 CTGTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGCGTGCCCTTCAACATC 8862557 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || ||||| |||||||| || |||||||||||| | || |||| || ||||| Sbjct 8862556 GCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAGGACTAAAGCCAGGTGAC 8862497 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 || || || || || ||||||| |||||||||| | |||||||| |||| Sbjct 8862496 TTCGTACATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGC 8862448 >seq17 Length=19722643 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 6747026 CAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 6747085 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || |||||||| ||||||||||| || || || || ||||| |||||| Sbjct 6747086 ATCCATTCGGAGATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 6747133 >seq141 Length=6018405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| | Sbjct 2352618 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 2352677 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| || | ||| ||||| || | | |||||| Sbjct 2352678 AACGAGTGGCAGAGTATCAACGTTTTGCAGTCATG 2352712 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | |||||||| ||||| | |||||| ||| ||||||| ||| | |||||||| Sbjct 2325516 TTCGTCATCTTTCCAATCCAATACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 2325575 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 2325576 TCCTTCTGGACAGCAGAAGAGGT 2325598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418299186915