Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq63 116 3e-21 seq9 84.2 2e-11 >seq63 Length=10485012 Score = 116 bits (128), Expect = 3e-21 Identities = 364/559 (65%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | ||||| | |||| | ||||| || || ||| | | |||||| | Sbjct 8862298 AAACAGCCATTTCCATTTCAATAGTCAGTTGAGGACTGTACCCCTCAATCTGAAAGTCTT 8862357 Query 111623 CAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGG 111682 |||| || || || || ||||| |||| ||||| || || || || || Sbjct 8862358 CAGCCTTGAAGTCATCCATTGTCTCAACTTTTCGAAGGATTTTGAGCTTCGGGAAAGGCC 8862417 Query 111683 TAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCAT 111742 | || | | | |||||| | || | ||| |||||||| | |||| ||| |||| Sbjct 8862418 TTGGTTCTTGCTGAAGCTGCATTTTCAGCAGCTCAATGTGATTCAGGTAAATATGTGCAT 8862477 Query 111743 CTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATG 111802 |||| | | ||| | || || | |||| | || |||||||||||||||||||| | Sbjct 8862478 CTCCCAAAGTATGTACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGCAATCATGTAGG 8862537 Query 111803 TGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTT 111862 |||| || || || || ||||| || ||||| || |||||||| || || || || | Sbjct 8862538 TGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCCCCTGACCTCT 8862597 Query 111863 GATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAG 111922 | || ||||| || || |||| | | ||| |||| || || || |||| || | Sbjct 8862598 GGTACAGCTGGCAGGACAGTTCACCATTCACCACGCAAAACTGGCAGAGGGCATGGCACG 8862657 Query 111923 GAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATGATCATCCTTCTGC 111979 |||| | ||| || | ||| || ||| ||| || ||| || |||||| Sbjct 8862658 GAGGGAGGGCCGTCAGAGGAATATCTTTTGGATTCCAGCCACTCAGGATGATTCTTCTGT 8862717 Query 111980 TGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAG 112039 || | | || || | ||| || ||||| || || ||||||| |||| ||| | Sbjct 8862718 CGTTGGGGTTGGTTTGATTGT-GTCAATGACCTTTTGCAGTTGGTCTACTCCTTGACCTG 8862776 Query 112040 TATAATCCG---CCTGACATCCAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCAT 112096 |||||| | ||| ||| | ||||| ||||||| | || |||| || || ||| Sbjct 8862777 AATAATCTGAATCCT--TATCTA-TGTATTCTGCCCCAAAATGCTTCCACTGAAAGACAT 8862833 Query 112097 AAATAGGCCCCAGATCTCC 112115 ||| || || | ||| || Sbjct 8862834 AAACTGGGCCTAAATCCCC 8862852 >seq9 Length=27295742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || || || || ||||| || ||||| Sbjct 15743176 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACG 15743235 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || ||||||||||| || || || || || ||||| || || || | | | ||| Sbjct 15743236 CCCAGGCCCATATCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACG 15743295 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||| | |||||| Sbjct 15743296 TAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATC 15743334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391908421877629