Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq161 109 3e-19 seq323 104 1e-17 seq101 100 2e-16 seq39 100 2e-16 seq50 82.4 5e-11 >seq161 Length=5000004 Score = 109 bits (120), Expect = 3e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| |||||||| ||| || || ||||| ||||| || Sbjct 410117 GCCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 410058 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 410057 AAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGG 409998 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| |||||| ||| | | || ||||| | |||||| Sbjct 409997 GATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCAC 409938 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| ||| || || || ||||| | || ||||| ||||||||||| |||| Sbjct 409937 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 409885 >seq323 Length=1159590 Score = 104 bits (114), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || |||||| ||| || || ||||| ||||| || Sbjct 303392 GCCACCCCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 303451 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 303452 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGG 303511 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| |||||| | || || | || ||||| | ||||| Sbjct 303512 GATGCCCTCCTTATCTTGGATCTTG-GCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 303570 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | |||| ||| || || || ||||| | || ||||| ||||||||||| |||| Sbjct 303571 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 303624 >seq101 Length=7325712 Score = 100 bits (110), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || |||||| ||| || || ||||| ||||| || Sbjct 127796 GCCACCCCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 127855 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 127856 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGGGG 127915 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATT----GTGTCTTCGCTCT 34654 | ||||| |||||| |||||| | || || ||| ||||| | || Sbjct 127916 GATGCCCTCTTTGTCTTGGATCTTG-GCCTTCAC------ATTCTCGGTGTCACTGAGCT 127968 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| |||| ||| || || || ||||| | || ||||| ||||||||||| |||| Sbjct 127969 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 128025 >seq39 Length=13401118 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || ||||| |||||| || ||||| || || || Sbjct 1513511 GCCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 1513452 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | || || || ||||| || ||||| || || | ||| ||||| || || Sbjct 1513451 CAGGGTGCGCCCATCCTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 1513392 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||||| Sbjct 1513391 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 1513333 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || ||||| || | || ||||| || |||||||| Sbjct 1513332 CCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 1513284 >seq50 Length=12588045 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | |||| |||| || || ||| ||| || || ||||| ||||| || Sbjct 11770629 GCCACCCCTCCGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 11770688 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || | | ||||| || || || |||||||| || | | ||| || || | || Sbjct 11770689 AAGAGTGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGATCGTGGGG 11770748 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | ||||| || ||| |||||| | || || | || ||||| | | ||||| Sbjct 11770749 GATGCCCTCTTTATCTTGGATCTTG-GCCTTCACATTCTCGATGGTGTCATTGGGCTCCA 11770807 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | | || ||| || || || ||||| | || ||||| ||||||||||| |||| Sbjct 11770808 CCTTCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 11770861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314699746225439