Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq81 190 2e-43 seq63 129 5e-25 seq121 123 2e-23 seq16 118 9e-22 seq29 100 2e-16 >seq81 Length=8639600 Score = 190 bits (210), Expect = 2e-43 Identities = 189/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || | |||||||||||||||| ||| Sbjct 6612195 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTGTTAGCCCAGAAAACATGGTCACC 6612136 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || ||||| ||| Sbjct 6612135 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCCGCCTATAAGGACAAGATAAACATCACT 6612076 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 ||||| | ||| | ||| |||| || || |||||||| || || |||| ||||||||| Sbjct 6612075 GAGCTGGAACTCAAGAACTCAACCATCACGTTCTGGAATACCACCCTGGAGGATGAAGGG 6612016 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| ||||||||||| |||||||||| || || Sbjct 6612015 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAATAGCCTGCCTC 6611956 Query 1521 ACCCT 1525 ||||| Sbjct 6611955 ACCCT 6611951 >seq63 Length=10485012 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| ||||||||||||||| || | ||| ||||| || | |||||| Sbjct 8862432 AGCTGCATTTTCAGCAGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGT 8862491 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | ||| ||||| || | || ||||| | ||| ||||||||||| || | || ||| Sbjct 8862492 ACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 8862551 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || || ||||| |||||||| |||| |||||||||| ||||| Sbjct 8862552 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAG 8862611 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || || || || | || ||||||| Sbjct 8862612 GACAGTTCACCATTCACCACGCAAAACTG 8862640 >seq121 Length=6552913 Score = 123 bits (136), Expect = 2e-23 Identities = 286/426 (67%), Gaps = 9/426 (2%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTT-TCACTTCCCATTAAAAGCA- 2320 ||| ||||| | || |||||||| | |||||| | || |||||| |||||| | Sbjct 5101579 AAATAGAATTTCGTGATTATGGGTCGGAAGACAGACTCACTCTCTTCCC--TAAAAGAAC 5101636 Query 2321 -GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379 | | ||| || |||||| | | | |||||||| ||| | || || || || | || Sbjct 5101637 TGACTTTTAAAGAACAGAGTTCAATTAGTTCTCAGAAGAGAACTCAAGGAACCTCTACAA 5101696 Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439 || ||||| ||| | || |||||| | | | | || | || |||| | ||||||| Sbjct 5101697 GGTGCTCATTTTCTAGCCAAAAGTCTGGGTGATGCCTTAAAACTTATTTAACAACCAGAA 5101756 Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499 |||| | | | ||||| | | |||||||| | || || || |||| ||| |||| || Sbjct 5101757 TTAACAAAGAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGCTTATAAGGAAGGC 5101816 Query 2500 ATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGT 2559 || | | ||| | | | | || ||| | |||||||| |||| |||||||| | Sbjct 5101817 ATGAACAAATCAGACCATCTCAAACTATTTGTGACAAGGATCATGCAGGAATTTGAAAAT 5101876 Query 2560 GATACA---TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCA 2616 | ||| | || ||||||| | || | ||||| || | ||| | |||| ||| Sbjct 5101877 AACACATTTTTTTTTCCAGAAACTGATTTGGGGAAATATAAGCTTCTTCCAGAATACCCA 5101936 Query 2617 GGTGTTCCCTCTGCCGTGCAAGAAG-AAAATGGAATTAGATACAAATTTGAGATATATGa 2675 |||||| |||| || ||||| | |||| || |||| | |||||||| ||||| | Sbjct 5101937 AGTGTTCTTTCTGGTGTCCAAGAGGAAAAAAGGTATTAAGTGGAAATTTGAAGTATATAA 5101996 Query 2676 aaaaaa 2681 ||| || Sbjct 5101997 AAAGAA 5102002 >seq16 Length=20317840 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 7343724 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 7343665 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 7343664 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 7343605 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 7343604 ATCGCCCTATGGATGACTGA 7343585 >seq29 Length=15480060 Score = 100 bits (110), Expect = 2e-16 Identities = 208/302 (69%), Gaps = 17/302 (6%) Strand=Plus/Minus Query 2384 CTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA-CCAGAATTA 2442 |||| ||| |||| ||| | | ||| | | ||| ||||| | || | ||||||||| Sbjct 11134371 CTCATTTTCTTGCTGAAAATCTGGATGATG-TCTTAAAATTTTTTGAGCAACCAGAATTA 11134313 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGT-GGAAGATCTGTCTATGAGGAGAGCAT 2501 | | | ||||| | |||| ||||| |||| || || ||||| ||| |||| ||| Sbjct 11134312 GCAAATAAAGTGGACATGATTAGGATAGTTGGGAGGCAGTTCTGTTTATAAGGA-AGCCG 11134254 Query 2502 T--ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGT 2559 | ||||| | || | | | || ||| | ||||||||| |||| || |||||| || Sbjct 11134253 TGAACAAGC-CAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGAA-TTTGAAAGT 11134196 Query 2560 GATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGT 2619 ||||| | || ||||||||| || | ||||| |||| || |||||| Sbjct 11134195 GATACTTTTTTTCCAGAAATTGATTTGGAGAAATAAAAACTTCTC---------CCAGGT 11134145 Query 2620 GTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaa 2679 |||| ||| ||| || | ||| | ||||||| |||||||||||| ||||||| || Sbjct 11134144 GTTCTTTCTAACGTCCAGAAGGAAGAAGGAATTAAATACAAATTTGAAGTATATGAGAAG 11134085 Query 2680 aa 2681 || Sbjct 11134084 AA 11134083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414437484673612