Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq65 113 3e-20 seq323 95.1 8e-15 seq101 93.3 3e-14 seq50 93.3 3e-14 seq161 91.5 1e-13 >seq2 Length=40953715 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| ||||| || || || |||||||| ||||| || || Sbjct 19232597 ATGCAGATTTTCGTAAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCG 19232538 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||| ||| ||||| ||||| | || || ||||| Sbjct 19232537 GATACAATAGAAAATGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG 19232478 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || |||||| Sbjct 19232477 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 19232418 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 19232417 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 19232383 >seq65 Length=10028950 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || ||| Sbjct 4317956 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4318015 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| | || || ||||||||||| | || || || || Sbjct 4318016 GACACCATTGAAAATGTAAAGGACAAGATCCAAGACAAAGAAGGCATCCCCCCTGACCAG 4318075 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || || ||||| | |||||| | ||||||||| Sbjct 4318076 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCTGATTACAAC 4318135 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4318136 ATCCAGAAAGAGTCCAC 4318152 >seq323 Length=1159590 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| || || || || ||||| || || || || || Sbjct 303622 AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 303563 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | || || || || | || || || Sbjct 303562 AGTGACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAGGAGGGCATCCCCCCCGA 303504 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 303503 CCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 303444 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 303443 CAACATCCAGAAAGAGTCCAC 303423 >seq101 Length=7325712 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| || || || || ||||| || || || || | Sbjct 128023 AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCTC 127964 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | ||| | || | || | | |||||||| || | || || || Sbjct 127963 AGTGACACCGAG--AATGTGAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCCGAC 127907 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 127906 CAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 127847 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 127846 AACATCCAGAAAGAGTCCAC 127827 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || | | Sbjct 127795 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTAGT 127736 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || || || || || || | || || || || Sbjct 127735 GACACCATTGAAAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 127676 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||| Sbjct 127675 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 127616 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 127615 ATCCAGAACGAATCCAC 127599 >seq50 Length=12588045 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG-ACTC 23666 ||||||||||||||||| || ||||| || || || || ||||| || |||| || | | Sbjct 11770859 AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCAC-CTTGAAGGTGGAGCC 11770801 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 || ||||| | || ||| | || | || | | || ||||| || | || | | Sbjct 11770800 CAATGACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCACG 11770742 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 |||| ||| | | || ||||||||||| || |||||||| | | |||| | |||| Sbjct 11770741 ATCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGATT 11770682 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||||||||| Sbjct 11770681 ACAACATCCAGAAAGAGTCCAC 11770660 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || ||| Sbjct 11770400 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 11770341 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || || || ||||| || | || | || || Sbjct 11770340 GACACCATTGAAAATGTAAAGGCCAAGATCCAAGATAAAGAGGGCATCCC-CGTGACCAG 11770282 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || ||||| | ||||| | ||||||||| Sbjct 11770281 CAGAGGCTTATCTTTGCCGGCAAGCAGCTAGAAGATGGCTGCACTCTTTCTGATTACAAC 11770222 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 11770221 ATCCAGAAAGAGTCAAC 11770205 >seq161 Length=5000004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| || || || || ||||| || || || || || Sbjct 409887 AAAATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 409946 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | ||| || || || || || || | || || || Sbjct 409947 AGTGACACCATCGAAAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGAC 410006 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || || ||||| | |||||| | |||||| Sbjct 410007 CAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACTCTTTCTGATTAC 410066 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 410067 AACATCCAGAAAGAGTCAAC 410086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977537993764