Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq63 228 7e-55 seq9 165 7e-36 seq70 91.5 1e-13 >seq63 Length=10485012 Score = 228 bits (252), Expect = 7e-55 Identities = 355/513 (69%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| || || || || ||||| || ||||| | || | ||| | ||||| Sbjct 8862408 GGGAAAGGC-CTTGGTTCTTGCTGAAGCTGCATTTTCAGCAGCTCAATGTGATTCAGGTA 8862466 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 | || |||||||||| || || || || || || || | ||| || |||| ||| || Sbjct 8862467 AATATGTGCATCTCCCAAAGTATGTACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGC 8862526 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||| ||||| || | |||||||||||||| |||||||| || || |||||||| Sbjct 8862527 AATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 8862586 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 ||||||||||||||| |||||||| || || || || | |||| ||||||| || | Sbjct 8862587 CCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACCACGCAAAACTGGCAGAG 8862646 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 ||||||||||||||| |||||| | ||| | ||||| || |||||| ||| || ||| Sbjct 8862647 GGCATGGCACGGAGGGAGGGCCGTCAGAGGAATATCTTTTGGATTCCAGCCACTCAGGAT 8862706 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970 ||| | ||||| | |||||| | |||| ||| | | | |||||||| || || || Sbjct 8862707 GATTCTTCTGTCGTTGGGGTTGGT-TTGATTGTGTCAATGACCTTTTGCAGTTGGTCTAC 8862765 Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030 || || || || |||| | |||||| ||||||| Sbjct 8862766 TCCTTGACCTGAATAATCTGAATCCTTATCTATGTATTCTGCCCCAAAATGCTTCCACTG 8862825 Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090 || | || || || || | || || |||| |||| ||| ||| ||||| | Sbjct 8862826 AAAGACATAAACTGGGCCTAAATCCCCTTCTTTTCTGTTGGAGAACCCCAAGCTGTCCTA 8862885 Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30123 ||||||| || || ||||| |||||||| || Sbjct 8862886 GAAGTCTCGAGACCCATTGGCATCCCAGATTTT 8862918 >seq9 Length=27295742 Score = 165 bits (182), Expect = 7e-36 Identities = 136/166 (82%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 15743172 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGG 15743231 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| ||||||||||||||||| |||||||| || ||||| || | Sbjct 15743232 CACGCCCAGGCCCATATCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC 15743291 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 |||||| ||||| || | ||||||||||||||| |||||||| ||| Sbjct 15743292 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATCAGA 15743337 >seq70 Length=9335154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | || || | | ||||| |||||| || || Sbjct 9239470 TTGAGGTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 9239411 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 9239410 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAGTTCTGTTTACCT 9239363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406124673262738